Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RLO149_RS09620 | Genome accession | NC_015730 |
| Coordinates | 2030367..2030870 (+) | Length | 167 a.a. |
| NCBI ID | WP_013961893.1 | Uniprot ID | - |
| Organism | Roseobacter litoralis Och 149 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2025367..2035870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RLO149_RS09605 (RLO149_c019750) | - | 2026152..2027369 (+) | 1218 | WP_013961889.1 | ABC transporter permease | - |
| RLO149_RS09610 (RLO149_c019760) | - | 2027455..2029545 (+) | 2091 | WP_013961890.1 | ABC transporter ATP-binding protein | - |
| RLO149_RS09615 (RLO149_c019770) | - | 2029562..2030146 (-) | 585 | WP_013961891.1 | lytic transglycosylase domain-containing protein | - |
| RLO149_RS09620 (RLO149_c019790) | ssb | 2030367..2030870 (+) | 504 | WP_013961893.1 | single-stranded DNA-binding protein | Machinery gene |
| RLO149_RS09630 (RLO149_c019820) | - | 2031470..2032000 (+) | 531 | WP_013961894.1 | Hint domain-containing protein | - |
| RLO149_RS09635 (RLO149_c019830) | - | 2031997..2032854 (-) | 858 | WP_013961895.1 | NAD(P)H-hydrate dehydratase | - |
| RLO149_RS09640 (RLO149_c019840) | - | 2032896..2033579 (-) | 684 | WP_013961896.1 | NAD(P)H-hydrate epimerase | - |
| RLO149_RS09645 (RLO149_c019850) | - | 2033750..2034088 (+) | 339 | WP_011568744.1 | P-II family nitrogen regulator | - |
| RLO149_RS09650 (RLO149_c019860) | glnA | 2034138..2035541 (+) | 1404 | WP_013961897.1 | type I glutamate--ammonia ligase | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18051.83 Da Isoelectric Point: 5.3397
>NTDB_id=41630 RLO149_RS09620 WP_013961893.1 2030367..2030870(+) (ssb) [Roseobacter litoralis Och 149]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDKNTGERKERTEWHSVAIFSEPLVRVAEQYLRKGSKIYV
EGQLETRKWQDQSGQDKYSTEVVLRPYTSTLTMLDSRDGGGGSSGGGGGGGADRMGYDDRGGDSYGGGASNTPSPAPSRD
LDDEIPF
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDKNTGERKERTEWHSVAIFSEPLVRVAEQYLRKGSKIYV
EGQLETRKWQDQSGQDKYSTEVVLRPYTSTLTMLDSRDGGGGSSGGGGGGGADRMGYDDRGGDSYGGGASNTPSPAPSRD
LDDEIPF
Nucleotide
Download Length: 504 bp
>NTDB_id=41630 RLO149_RS09620 WP_013961893.1 2030367..2030870(+) (ssb) [Roseobacter litoralis Och 149]
ATGGCCGGCTCTGTGAACAAAGTAATCCTCATCGGTAATCTGGGACGCGATCCGGAAGTGCGCAGTTTTCAGAATGGAGG
CAAAGTCTGCAACCTGCGGATTGCCACCTCCGAGACGTGGAAGGACAAAAATACCGGCGAGCGGAAAGAACGCACAGAAT
GGCATTCGGTAGCAATTTTTTCCGAACCTCTGGTGCGTGTCGCAGAACAATATCTGCGCAAAGGTTCAAAGATCTACGTC
GAGGGGCAACTCGAAACGCGCAAATGGCAGGATCAATCCGGACAGGACAAATATTCCACGGAAGTCGTTCTTAGGCCTTA
TACCTCTACTCTCACGATGCTTGACAGTCGTGATGGCGGCGGCGGTAGTTCCGGCGGCGGTGGCGGCGGCGGTGCGGACC
GCATGGGTTACGACGACCGGGGCGGCGATAGTTACGGCGGCGGCGCAAGCAACACGCCAAGCCCGGCACCGTCGCGTGAT
CTGGACGATGAAATCCCGTTCTGA
ATGGCCGGCTCTGTGAACAAAGTAATCCTCATCGGTAATCTGGGACGCGATCCGGAAGTGCGCAGTTTTCAGAATGGAGG
CAAAGTCTGCAACCTGCGGATTGCCACCTCCGAGACGTGGAAGGACAAAAATACCGGCGAGCGGAAAGAACGCACAGAAT
GGCATTCGGTAGCAATTTTTTCCGAACCTCTGGTGCGTGTCGCAGAACAATATCTGCGCAAAGGTTCAAAGATCTACGTC
GAGGGGCAACTCGAAACGCGCAAATGGCAGGATCAATCCGGACAGGACAAATATTCCACGGAAGTCGTTCTTAGGCCTTA
TACCTCTACTCTCACGATGCTTGACAGTCGTGATGGCGGCGGCGGTAGTTCCGGCGGCGGTGGCGGCGGCGGTGCGGACC
GCATGGGTTACGACGACCGGGGCGGCGATAGTTACGGCGGCGGCGCAAGCAACACGCCAAGCCCGGCACCGTCGCGTGAT
CTGGACGATGAAATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
47.849 |
100 |
0.533 |
| ssb | Vibrio cholerae strain A1552 |
50.289 |
100 |
0.521 |
| ssb | Neisseria meningitidis MC58 |
40 |
100 |
0.431 |
| ssb | Neisseria gonorrhoeae MS11 |
38.547 |
100 |
0.413 |