Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CNE_RS02050 Genome accession   NC_015726
Coordinates   413400..413948 (+) Length   182 a.a.
NCBI ID   WP_013955485.1    Uniprot ID   G0EUS1
Organism   Cupriavidus necator N-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 408400..418948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNE_RS02040 (CNE_1c04150) uvrA 408735..411599 (-) 2865 WP_013955483.1 excinuclease ABC subunit UvrA -
  CNE_RS02045 (CNE_1c04160) - 411966..413216 (+) 1251 WP_013955484.1 MFS transporter -
  CNE_RS02050 (CNE_1c04170) ssb 413400..413948 (+) 549 WP_013955485.1 single-stranded DNA-binding protein Machinery gene
  CNE_RS02055 (CNE_1c04180) - 414079..415356 (+) 1278 WP_041227720.1 site-specific integrase -
  CNE_RS02060 (CNE_1c04190) - 415356..416888 (+) 1533 WP_013955487.1 site-specific integrase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18936.63 Da        Isoelectric Point: 5.9517

>NTDB_id=41612 CNE_RS02050 WP_013955485.1 413400..413948(+) (ssb) [Cupriavidus necator N-1]
MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQSGEMKEATEWHRVSFFGKIAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGDEGGYGGGAGGGGYSREASGGGYGGGARGGQGGAQGGGQSGG
AARRPQQPASNGFEDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=41612 CNE_RS02050 WP_013955485.1 413400..413948(+) (ssb) [Cupriavidus necator N-1]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGACCAATATCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGAGCGGCGAGATGAAGGAGGCCACCGAATGGC
ACCGCGTCTCGTTCTTCGGCAAGATCGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGATCGTCGGTCTATATCGAAGGC
CGCATCCGCACGCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACTCCACTGAAATCGTTGCCGACCAGATGCAGAT
GCTGGGTTCGCGCCAGGGCGGCGGCGGTGGCGGTGACGAAGGCGGCTACGGTGGCGGCGCAGGCGGCGGTGGCTACAGCC
GCGAAGCGTCGGGCGGCGGCTACGGCGGTGGCGCCCGCGGCGGCCAGGGCGGTGCCCAGGGTGGCGGCCAGAGCGGTGGC
GCGGCACGCCGTCCGCAGCAGCCGGCCTCGAATGGTTTCGAGGATATGGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0EUS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.852

100

0.538
  ssb Glaesserella parasuis strain SC1401

49.468

100

0.511
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.456
  ssb Neisseria meningitidis MC58

45.604

100

0.456

Multiple sequence alignment