Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   E3T00_RS07320 Genome accession   NZ_CP047784
Coordinates   1539069..1539566 (-) Length   165 a.a.
NCBI ID   WP_001829055.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1209     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534069..1544566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T00_RS07295 (E3T00_07295) gcvPB 1534231..1535703 (-) 1473 WP_043044320.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  E3T00_RS07300 (E3T00_07300) gcvPA 1535696..1537042 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E3T00_RS07305 (E3T00_07305) gcvT 1537062..1538153 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  E3T00_RS07310 (E3T00_07310) - 1538312..1538836 (-) 525 WP_001015121.1 shikimate kinase -
  E3T00_RS07315 (E3T00_07315) - 1538826..1538972 (-) 147 WP_001789879.1 hypothetical protein -
  E3T00_RS07320 (E3T00_07320) comGF 1539069..1539566 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3T00_RS07325 (E3T00_07325) comGE 1539484..1539783 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3T00_RS07330 (E3T00_07330) comGD 1539770..1540216 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3T00_RS07335 (E3T00_07335) comGC 1540194..1540505 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3T00_RS07340 (E3T00_07340) comGB 1540519..1541589 (-) 1071 WP_160198952.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3T00_RS07345 (E3T00_07345) comGA 1541561..1542535 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  E3T00_RS07350 (E3T00_07350) - 1542587..1543210 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3T00_RS07355 (E3T00_07355) - 1543207..1543536 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3T00_RS07360 (E3T00_07360) - 1543536..1544522 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2192

>NTDB_id=416045 E3T00_RS07320 WP_001829055.1 1539069..1539566(-) (comGF) [Staphylococcus aureus strain UP_1209]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=416045 E3T00_RS07320 WP_001829055.1 1539069..1539566(-) (comGF) [Staphylococcus aureus strain UP_1209]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

98.182

100

0.982

Multiple sequence alignment