Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   E3T00_RS07340 Genome accession   NZ_CP047784
Coordinates   1540519..1541589 (-) Length   356 a.a.
NCBI ID   WP_160198952.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1209     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535519..1546589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T00_RS07300 (E3T00_07300) gcvPA 1535696..1537042 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E3T00_RS07305 (E3T00_07305) gcvT 1537062..1538153 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  E3T00_RS07310 (E3T00_07310) - 1538312..1538836 (-) 525 WP_001015121.1 shikimate kinase -
  E3T00_RS07315 (E3T00_07315) - 1538826..1538972 (-) 147 WP_001789879.1 hypothetical protein -
  E3T00_RS07320 (E3T00_07320) comGF 1539069..1539566 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  E3T00_RS07325 (E3T00_07325) comGE 1539484..1539783 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E3T00_RS07330 (E3T00_07330) comGD 1539770..1540216 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  E3T00_RS07335 (E3T00_07335) comGC 1540194..1540505 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E3T00_RS07340 (E3T00_07340) comGB 1540519..1541589 (-) 1071 WP_160198952.1 competence type IV pilus assembly protein ComGB Machinery gene
  E3T00_RS07345 (E3T00_07345) comGA 1541561..1542535 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  E3T00_RS07350 (E3T00_07350) - 1542587..1543210 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E3T00_RS07355 (E3T00_07355) - 1543207..1543536 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E3T00_RS07360 (E3T00_07360) - 1543536..1544522 (-) 987 WP_000161314.1 ROK family glucokinase -
  E3T00_RS07365 (E3T00_07365) - 1544519..1544722 (-) 204 WP_000087561.1 YqgQ family protein -
  E3T00_RS07370 (E3T00_07370) - 1544703..1546166 (-) 1464 WP_001017867.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41403.83 Da        Isoelectric Point: 10.0606

>NTDB_id=416049 E3T00_RS07340 WP_160198952.1 1540519..1541589(-) (comGB) [Staphylococcus aureus strain UP_1209]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGATILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLLMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=416049 E3T00_RS07340 WP_160198952.1 1540519..1541589(-) (comGB) [Staphylococcus aureus strain UP_1209]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTGCCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGTAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCC
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACT
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-346)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.157

100

0.992
  comGB Staphylococcus aureus N315

99.157

100

0.992

Multiple sequence alignment