Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   H7792_RS08810 Genome accession   NZ_CP060643
Coordinates   1528443..1528796 (-) Length   117 a.a.
NCBI ID   WP_228650323.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY416     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 1523443..1533796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7792_RS07475 (H7792_07455) - 1523612..1524217 (-) 606 WP_002982799.1 response regulator -
  H7792_RS07480 (H7792_07460) - 1524198..1525760 (-) 1563 WP_136284952.1 hypothetical protein -
  H7792_RS07485 (H7792_07465) - 1525800..1527707 (-) 1908 WP_023610628.1 FtsX-like permease family protein -
  H7792_RS07490 (H7792_07470) - 1527709..1528446 (-) 738 WP_009880388.1 ABC transporter ATP-binding protein -
  H7792_RS08810 (H7792_07475) rcrQ 1528443..1528796 (-) 354 WP_228650323.1 ATP-binding cassette domain-containing protein Regulator
  H7792_RS07500 (H7792_07480) - 1528733..1530355 (-) 1623 WP_228650324.1 DUF4135 domain-containing protein -
  H7792_RS07505 (H7792_07485) - 1530439..1530594 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  H7792_RS07510 (H7792_07490) lacG 1531085..1532491 (-) 1407 WP_063629613.1 6-phospho-beta-galactosidase -

Sequence


Protein


Download         Length: 117 a.a.        Molecular weight: 13551.45 Da        Isoelectric Point: 6.8621

>NTDB_id=416027 H7792_RS08810 WP_228650323.1 1528443..1528796(-) (rcrQ) [Streptococcus pyogenes strain TSPY416]
MGEGIRDNPSLSGGQKQRISLARELVTTPRILVLDEPTSALDVKTERIIQKNVEALHCTRILVTHRLNTVEKADKILIMD
NGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 354 bp        

>NTDB_id=416027 H7792_RS08810 WP_228650323.1 1528443..1528796(-) (rcrQ) [Streptococcus pyogenes strain TSPY416]
TTGGGAGAGGGAATTCGAGATAATCCATCACTATCTGGGGGGCAAAAACAACGAATTTCTTTAGCAAGAGAACTTGTAAC
CACCCCTAGAATCTTAGTTCTTGACGAACCTACATCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTG
AGGCTTTACATTGTACGAGGATTTTGGTTACCCATAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGAT
AATGGCAAAATTATTGACTATGGAAACCATCATTATTTGTACAAAAATAATAAGGATTATTGTGACTTATATGACTCGTA
TATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains


Predicted by InterProScan.

(9-39)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.818

94.017

0.393

  comA Streptococcus mitis NCTC 12261

45

85.47

0.385

  comA Streptococcus pneumoniae Rx1

44

85.47

0.376

  comA Streptococcus pneumoniae D39

44

85.47

0.376

  comA Streptococcus pneumoniae TIGR4

44

85.47

0.376

  comA Streptococcus pneumoniae R6

44

85.47

0.376

  comA Streptococcus mitis SK321

44

85.47

0.376

  comA/nlmT Streptococcus mutans UA159

42.157

87.179

0.368

  rcrP Streptococcus mutans UA159

39.091

94.017

0.368


Multiple sequence alignment