Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H7792_RS02635 Genome accession   NZ_CP060643
Coordinates   512822..513436 (+) Length   204 a.a.
NCBI ID   WP_136284975.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY416     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 507822..518436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7792_RS02610 (H7792_02595) - 507973..509373 (+) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  H7792_RS02615 (H7792_02600) - 509373..509750 (+) 378 WP_023610575.1 S1 RNA-binding domain-containing protein -
  H7792_RS02620 (H7792_02605) cysK 509768..510709 (-) 942 WP_009880467.1 cysteine synthase A -
  H7792_RS02625 (H7792_02610) - 510837..511469 (-) 633 WP_009880468.1 YigZ family protein -
  H7792_RS02630 (H7792_02615) comFA/cflA 511525..512850 (+) 1326 WP_111713664.1 DEAD/DEAH box helicase Machinery gene
  H7792_RS02635 (H7792_02620) comFC/cflB 512822..513436 (+) 615 WP_136284975.1 ComF family protein Machinery gene
  H7792_RS02640 (H7792_02625) hpf 513567..514115 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23367.31 Da        Isoelectric Point: 9.2123

>NTDB_id=415973 H7792_RS02635 WP_136284975.1 512822..513436(+) (comFC/cflB) [Streptococcus pyogenes strain TSPY416]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=415973 H7792_RS02635 WP_136284975.1 512822..513436(+) (comFC/cflB) [Streptococcus pyogenes strain TSPY416]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

42.647

100

0.426
  comFC/cflB Streptococcus pneumoniae D39

42.647

100

0.426
  comFC/cflB Streptococcus pneumoniae R6

42.647

100

0.426
  comFC/cflB Streptococcus pneumoniae TIGR4

42.647

100

0.426
  comFC/cflB Streptococcus mitis SK321

42.647

100

0.426
  comFC/cflB Streptococcus mitis NCTC 12261

42.157

100

0.422