Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E3T04_RS00350 Genome accession   NZ_CP047782
Coordinates   66549..67052 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain UP_1352     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 66549..86171 66549..67052 within 0


Gene organization within MGE regions


Location: 66549..86171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T04_RS00350 (E3T04_00350) ssbA 66549..67052 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  E3T04_RS00355 (E3T04_00355) rpsR 67104..67346 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  E3T04_RS00360 (E3T04_00360) - 67578..68297 (-) 720 WP_000400841.1 type II toxin-antitoxin system PemK/MazF family toxin -
  E3T04_RS00365 (E3T04_00365) - 68410..69624 (-) 1215 WP_000270135.1 site-specific integrase -
  E3T04_RS00370 (E3T04_00370) - 69785..70408 (-) 624 WP_000230361.1 helix-turn-helix transcriptional regulator -
  E3T04_RS00375 (E3T04_00375) - 70557..70721 (+) 165 WP_001611932.1 helix-turn-helix domain-containing protein -
  E3T04_RS00380 (E3T04_00380) - 70722..70994 (+) 273 WP_001138305.1 helix-turn-helix domain-containing protein -
  E3T04_RS00385 (E3T04_00385) - 71006..71179 (+) 174 WP_000784892.1 hypothetical protein -
  E3T04_RS00390 (E3T04_00390) - 71146..71349 (+) 204 WP_160199949.1 pathogenicity island protein -
  E3T04_RS00395 (E3T04_00395) - 71351..71734 (+) 384 WP_000403837.1 hypothetical protein -
  E3T04_RS00400 (E3T04_00400) tscT 71735..72061 (+) 327 WP_001103967.1 type II toxin-antitoxin system toxin TscT -
  E3T04_RS00405 (E3T04_00405) - 72126..72995 (+) 870 WP_001002709.1 primase alpha helix C-terminal domain-containing protein -
  E3T04_RS00410 (E3T04_00410) - 73009..74718 (+) 1710 WP_000447468.1 DUF927 domain-containing protein -
  E3T04_RS00415 (E3T04_00415) - 75028..75408 (+) 381 WP_000356942.1 hypothetical protein -
  E3T04_RS00420 (E3T04_00420) - 75405..76046 (+) 642 WP_001019762.1 hypothetical protein -
  E3T04_RS00425 (E3T04_00425) - 76754..77098 (+) 345 WP_001288442.1 hypothetical protein -
  E3T04_RS00430 (E3T04_00430) - 77129..77782 (+) 654 WP_000214170.1 hypothetical protein -
  E3T04_RS00435 (E3T04_00435) - 77835..78362 (+) 528 WP_000771361.1 spore coat protein -
  E3T04_RS00440 (E3T04_00440) - 78494..78706 (+) 213 WP_001656917.1 hypothetical protein -
  E3T04_RS00445 (E3T04_00445) - 78703..79272 (+) 570 WP_001293071.1 terminase small subunit -
  E3T04_RS00450 (E3T04_00450) - 79549..80517 (+) 969 WP_000801977.1 Abi family protein -
  E3T04_RS00455 (E3T04_00455) - 80659..81096 (+) 438 WP_073392942.1 DUF3102 domain-containing protein -
  E3T04_RS00460 (E3T04_00460) - 81214..81726 (+) 513 WP_000813311.1 hypothetical protein -
  E3T04_RS14905 - 81742..81921 (+) 180 WP_000797954.1 hypothetical protein -
  E3T04_RS00465 (E3T04_00465) - 82685..83692 (-) 1008 WP_001080636.1 Abi family protein -
  E3T04_RS00470 (E3T04_00470) - 83698..84412 (-) 715 Protein_95 tyrosine-type recombinase/integrase -
  E3T04_RS00475 (E3T04_00475) - 84649..85017 (+) 369 WP_000849155.1 YxeA family protein -
  E3T04_RS00480 (E3T04_00480) - 85198..85770 (+) 573 WP_000769723.1 PepSY domain-containing protein -
  E3T04_RS00485 (E3T04_00485) - 85908..86171 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=415945 E3T04_RS00350 WP_000934799.1 66549..67052(+) (ssbA) [Staphylococcus aureus strain UP_1352]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=415945 E3T04_RS00350 WP_000934799.1 66549..67052(+) (ssbA) [Staphylococcus aureus strain UP_1352]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment