Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3T07_RS09455 | Genome accession | NZ_CP047781 |
| Coordinates | 1827611..1828114 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain UP_1452 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1773507..1832174 | 1827611..1828114 | within | 0 |
Gene organization within MGE regions
Location: 1773507..1832174
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T07_RS09150 (E3T07_09150) | - | 1773507..1775063 (-) | 1557 | WP_000028598.1 | type I restriction-modification system subunit M | - |
| E3T07_RS09155 (E3T07_09155) | - | 1775123..1775242 (+) | 120 | WP_031788484.1 | hypothetical protein | - |
| E3T07_RS09160 (E3T07_09160) | - | 1775325..1776008 (-) | 684 | WP_160191400.1 | superantigen-like protein SSL10 | - |
| E3T07_RS09165 (E3T07_09165) | - | 1776371..1777069 (-) | 699 | WP_000778481.1 | superantigen-like protein SSL9 | - |
| E3T07_RS09170 (E3T07_09170) | - | 1777410..1778105 (-) | 696 | WP_000769829.1 | superantigen-like protein SSL7 | - |
| E3T07_RS09175 (E3T07_09175) | - | 1778552..1779256 (-) | 705 | WP_160191401.1 | superantigen-like protein SSL5 | - |
| E3T07_RS09180 (E3T07_09180) | - | 1779617..1780537 (-) | 921 | WP_000784525.1 | superantigen-like protein SSL4 | - |
| E3T07_RS09185 (E3T07_09185) | - | 1780884..1781915 (-) | 1032 | WP_000702714.1 | superantigen-like protein SSL3 | - |
| E3T07_RS09190 (E3T07_09190) | - | 1782203..1782904 (-) | 702 | WP_000782834.1 | superantigen-like protein SSL2 | - |
| E3T07_RS09195 (E3T07_09195) | - | 1783187..1783867 (-) | 681 | WP_000668994.1 | superantigen-like protein SSL1 | - |
| E3T07_RS09200 (E3T07_09200) | - | 1784339..1785184 (+) | 846 | WP_001024392.1 | SDR family oxidoreductase | - |
| E3T07_RS09205 (E3T07_09205) | - | 1785203..1785562 (+) | 360 | WP_001021628.1 | DUF1304 domain-containing protein | - |
| E3T07_RS09210 (E3T07_09210) | - | 1786084..1786236 (+) | 153 | WP_000248838.1 | hypothetical protein | - |
| E3T07_RS09215 (E3T07_09215) | - | 1786494..1786820 (+) | 327 | WP_001799349.1 | IS3 family transposase | - |
| E3T07_RS15090 | - | 1787345..1787458 (-) | 114 | Protein_1790 | pathogenicity island protein | - |
| E3T07_RS09220 (E3T07_09220) | - | 1787965..1788670 (+) | 706 | Protein_1791 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3T07_RS09225 (E3T07_09225) | - | 1789062..1789598 (+) | 537 | WP_000551644.1 | hypothetical protein | - |
| E3T07_RS09230 (E3T07_09230) | guaA | 1790128..1791669 (-) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| E3T07_RS09235 (E3T07_09235) | guaB | 1791694..1793160 (-) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| E3T07_RS09240 (E3T07_09240) | pbuX | 1793198..1794466 (-) | 1269 | WP_160191402.1 | xanthine permease PbuX | - |
| E3T07_RS09245 (E3T07_09245) | xpt | 1794466..1795044 (-) | 579 | WP_000421416.1 | xanthine phosphoribosyltransferase | - |
| E3T07_RS09250 (E3T07_09250) | - | 1795557..1795964 (+) | 408 | WP_001791353.1 | general stress protein | - |
| E3T07_RS09255 (E3T07_09255) | - | 1796107..1796769 (+) | 663 | WP_160191403.1 | hypothetical protein | - |
| E3T07_RS09260 (E3T07_09260) | - | 1796887..1797843 (+) | 957 | WP_160191404.1 | hypothetical protein | - |
| E3T07_RS09265 (E3T07_09265) | - | 1798776..1798877 (-) | 102 | WP_001789518.1 | hypothetical protein | - |
| E3T07_RS09270 (E3T07_09270) | - | 1798962..1800350 (+) | 1389 | WP_000991010.1 | L-cystine transporter | - |
| E3T07_RS09275 (E3T07_09275) | nfsA | 1800430..1801185 (-) | 756 | WP_001279733.1 | oxygen-insensitive NADPH nitroreductase | - |
| E3T07_RS09280 (E3T07_09280) | ahpC | 1801676..1802245 (+) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| E3T07_RS09285 (E3T07_09285) | ahpF | 1802261..1803784 (+) | 1524 | WP_000930503.1 | alkyl hydroperoxide reductase subunit F | - |
| E3T07_RS14995 | - | 1803899..1805518 (+) | 1620 | WP_000887770.1 | hypothetical protein | - |
| E3T07_RS09295 (E3T07_09295) | - | 1805591..1806217 (+) | 627 | WP_000746688.1 | NDxxF motif lipoprotein | - |
| E3T07_RS09300 (E3T07_09300) | - | 1806488..1806871 (+) | 384 | WP_001793753.1 | hypothetical protein | - |
| E3T07_RS09305 (E3T07_09305) | - | 1806937..1807518 (-) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| E3T07_RS09310 (E3T07_09310) | - | 1807696..1807905 (+) | 210 | WP_000211680.1 | hypothetical protein | - |
| E3T07_RS09315 (E3T07_09315) | - | 1807944..1808198 (-) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| E3T07_RS09320 (E3T07_09320) | - | 1808492..1808755 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| E3T07_RS09325 (E3T07_09325) | - | 1808893..1809465 (-) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| E3T07_RS09330 (E3T07_09330) | - | 1809646..1810014 (-) | 369 | WP_000849155.1 | YxeA family protein | - |
| E3T07_RS09335 (E3T07_09335) | - | 1810251..1810965 (+) | 715 | Protein_1814 | tyrosine-type recombinase/integrase | - |
| E3T07_RS09340 (E3T07_09340) | - | 1810971..1811978 (+) | 1008 | WP_001080636.1 | Abi family protein | - |
| E3T07_RS15095 | - | 1812742..1812921 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| E3T07_RS09345 (E3T07_09345) | - | 1812937..1813449 (-) | 513 | WP_160191405.1 | hypothetical protein | - |
| E3T07_RS09350 (E3T07_09350) | - | 1813567..1813968 (-) | 402 | WP_000683457.1 | hypothetical protein | - |
| E3T07_RS09355 (E3T07_09355) | - | 1814146..1815114 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| E3T07_RS09360 (E3T07_09360) | - | 1815391..1815960 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| E3T07_RS09365 (E3T07_09365) | - | 1815957..1816169 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| E3T07_RS09370 (E3T07_09370) | - | 1816301..1816828 (-) | 528 | WP_000771361.1 | spore coat protein | - |
| E3T07_RS09375 (E3T07_09375) | - | 1816881..1817534 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| E3T07_RS09380 (E3T07_09380) | - | 1817565..1817909 (-) | 345 | WP_001288442.1 | hypothetical protein | - |
| E3T07_RS09385 (E3T07_09385) | - | 1818617..1819258 (-) | 642 | WP_001019762.1 | hypothetical protein | - |
| E3T07_RS09390 (E3T07_09390) | - | 1819255..1819635 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| E3T07_RS09395 (E3T07_09395) | - | 1819945..1821654 (-) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| E3T07_RS09400 (E3T07_09400) | - | 1821668..1822537 (-) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| E3T07_RS09405 (E3T07_09405) | tscT | 1822602..1822928 (-) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| E3T07_RS09410 (E3T07_09410) | - | 1822929..1823312 (-) | 384 | WP_000403837.1 | hypothetical protein | - |
| E3T07_RS09415 (E3T07_09415) | - | 1823314..1823517 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| E3T07_RS09420 (E3T07_09420) | - | 1823484..1823657 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| E3T07_RS09425 (E3T07_09425) | - | 1823669..1823941 (-) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| E3T07_RS09430 (E3T07_09430) | - | 1823942..1824106 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| E3T07_RS09435 (E3T07_09435) | - | 1824255..1824878 (+) | 624 | WP_000230361.1 | helix-turn-helix domain-containing protein | - |
| E3T07_RS09440 (E3T07_09440) | - | 1825039..1826253 (+) | 1215 | WP_000270135.1 | tyrosine-type recombinase/integrase | - |
| E3T07_RS09445 (E3T07_09445) | - | 1826366..1827085 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3T07_RS09450 (E3T07_09450) | rpsR | 1827317..1827559 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| E3T07_RS09455 (E3T07_09455) | ssbA | 1827611..1828114 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T07_RS09460 (E3T07_09460) | rpsF | 1828135..1828431 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| E3T07_RS09465 (E3T07_09465) | - | 1828675..1828866 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| E3T07_RS09470 (E3T07_09470) | ychF | 1828952..1830049 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| E3T07_RS09475 (E3T07_09475) | - | 1830061..1830264 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| E3T07_RS09480 (E3T07_09480) | - | 1830294..1831175 (-) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| E3T07_RS09485 (E3T07_09485) | - | 1831329..1832174 (-) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=415935 E3T07_RS09455 WP_000934799.1 1827611..1828114(-) (ssbA) [Staphylococcus aureus strain UP_1452]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=415935 E3T07_RS09455 WP_000934799.1 1827611..1828114(-) (ssbA) [Staphylococcus aureus strain UP_1452]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |