Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H7793_RS04035 Genome accession   NZ_CP060642
Coordinates   765492..766454 (+) Length   320 a.a.
NCBI ID   WP_002989200.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 760492..771454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7793_RS04010 (H7793_04010) - 760497..761087 (+) 591 WP_002989185.1 serine hydrolase -
  H7793_RS04015 (H7793_04015) - 761201..762421 (-) 1221 WP_136021581.1 DUF3114 domain-containing protein -
  H7793_RS04020 (H7793_04020) queA 762428..763456 (-) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H7793_RS04025 (H7793_04025) nagB 763658..764362 (+) 705 WP_002989194.1 glucosamine-6-phosphate deaminase -
  H7793_RS04030 (H7793_04030) - 764481..765197 (+) 717 WP_002989197.1 pseudouridine synthase -
  H7793_RS04035 (H7793_04035) coiA 765492..766454 (+) 963 WP_002989200.1 competence protein CoiA Machinery gene
  H7793_RS04040 (H7793_04040) pepF 766467..768272 (+) 1806 WP_228629724.1 oligoendopeptidase F Regulator
  H7793_RS04045 (H7793_04045) - 768647..769843 (+) 1197 WP_136021579.1 OFA family MFS transporter -
  H7793_RS04050 (H7793_04050) - 769909..770616 (+) 708 WP_002989211.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37749.14 Da        Isoelectric Point: 10.1206

>NTDB_id=415889 H7793_RS04035 WP_002989200.1 765492..766454(+) (coiA) [Streptococcus pyogenes strain TSPY1312]
MTKILTALDGKNQLISLVTQPISTKPPFCCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIEGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=415889 H7793_RS04035 WP_002989200.1 765492..766454(+) (coiA) [Streptococcus pyogenes strain TSPY1312]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTTGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTGAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.226

96.875

0.419
  coiA Streptococcus pneumoniae Rx1

41.935

96.875

0.406
  coiA Streptococcus pneumoniae D39

41.935

96.875

0.406
  coiA Streptococcus pneumoniae R6

41.935

96.875

0.406
  coiA Streptococcus pneumoniae TIGR4

41.935

96.875

0.406
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403