Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H7793_RS02955 Genome accession   NZ_CP060642
Coordinates   565200..565865 (+) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1312     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560200..570865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7793_RS02930 (H7793_02945) - 560352..561752 (+) 1401 WP_136021553.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  H7793_RS02935 (H7793_02950) - 561752..562129 (+) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  H7793_RS02940 (H7793_02955) cysK 562147..563088 (-) 942 WP_002988967.1 cysteine synthase A -
  H7793_RS02945 (H7793_02960) - 563216..563848 (-) 633 WP_002988970.1 YigZ family protein -
  H7793_RS02950 (H7793_02965) comFA/cflA 563903..565228 (+) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  H7793_RS02955 (H7793_02970) comFC/cflB 565200..565865 (+) 666 WP_002983685.1 ComF family protein Machinery gene
  H7793_RS02960 (H7793_02975) hpf 565945..566493 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  H7793_RS02965 (H7793_02980) - 567209..567523 (+) 315 WP_000420682.1 YdcP family protein -
  H7793_RS02970 (H7793_02985) - 567539..567925 (+) 387 WP_000985015.1 YdcP family protein -
  H7793_RS02975 (H7793_02990) - 567954..569339 (+) 1386 WP_000813488.1 FtsK/SpoIIIE domain-containing protein -
  H7793_RS02980 (H7793_02995) - 569342..569482 (+) 141 WP_074186995.1 conjugal transfer protein -
  H7793_RS02985 (H7793_03000) mobT 569517..570719 (+) 1203 Protein_540 MobT family relaxase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=415879 H7793_RS02955 WP_002983685.1 565200..565865(+) (comFC/cflB) [Streptococcus pyogenes strain TSPY1312]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=415879 H7793_RS02955 WP_002983685.1 565200..565865(+) (comFC/cflB) [Streptococcus pyogenes strain TSPY1312]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412