Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3T16_RS13995 | Genome accession | NZ_CP047777 |
| Coordinates | 2800878..2801348 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain UP_1632 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2783805..2806394 | 2800878..2801348 | within | 0 |
Gene organization within MGE regions
Location: 2783805..2806394
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T16_RS13865 (E3T16_13865) | - | 2783805..2785028 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| E3T16_RS13870 (E3T16_13870) | lukH | 2785464..2786519 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| E3T16_RS13875 (E3T16_13875) | lukG | 2786541..2787557 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| E3T16_RS13880 (E3T16_13880) | sph | 2787795..2788619 (-) | 825 | Protein_2701 | sphingomyelin phosphodiesterase | - |
| E3T16_RS13885 (E3T16_13885) | - | 2788676..2789713 (-) | 1038 | WP_000857180.1 | tyrosine-type recombinase/integrase | - |
| E3T16_RS13890 (E3T16_13890) | - | 2789776..2790018 (-) | 243 | WP_000427213.1 | hypothetical protein | - |
| E3T16_RS13895 (E3T16_13895) | - | 2790029..2791012 (-) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| E3T16_RS13900 (E3T16_13900) | - | 2791112..2791294 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| E3T16_RS13905 (E3T16_13905) | - | 2791498..2791839 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| E3T16_RS13910 (E3T16_13910) | - | 2791845..2792777 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| E3T16_RS13915 (E3T16_13915) | - | 2792793..2793506 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| E3T16_RS13920 (E3T16_13920) | - | 2793469..2793643 (+) | 175 | Protein_2709 | transcriptional regulator | - |
| E3T16_RS13925 (E3T16_13925) | - | 2793640..2793903 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| E3T16_RS13930 (E3T16_13930) | - | 2793919..2794134 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| E3T16_RS13935 (E3T16_13935) | - | 2794123..2794452 (-) | 330 | WP_000128909.1 | hypothetical protein | - |
| E3T16_RS13940 (E3T16_13940) | - | 2794503..2795255 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| E3T16_RS13945 (E3T16_13945) | - | 2795271..2795468 (+) | 198 | WP_001148856.1 | hypothetical protein | - |
| E3T16_RS13950 (E3T16_13950) | - | 2795455..2795835 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3T16_RS13955 (E3T16_13955) | - | 2795890..2796213 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| E3T16_RS13960 (E3T16_13960) | - | 2796210..2796371 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| E3T16_RS13965 (E3T16_13965) | - | 2796466..2796768 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3T16_RS13970 (E3T16_13970) | - | 2796773..2797033 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| E3T16_RS13975 (E3T16_13975) | - | 2797042..2797305 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3T16_RS13980 (E3T16_13980) | - | 2797314..2799257 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| E3T16_RS13985 (E3T16_13985) | - | 2799259..2800179 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| E3T16_RS13990 (E3T16_13990) | - | 2800260..2800877 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| E3T16_RS13995 (E3T16_13995) | ssbA | 2800878..2801348 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T16_RS14000 (E3T16_14000) | - | 2801378..2802271 (+) | 894 | WP_160177627.1 | DnaD domain protein | - |
| E3T16_RS14005 (E3T16_14005) | - | 2802278..2802496 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3T16_RS14010 (E3T16_14010) | - | 2802505..2802909 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3T16_RS14015 (E3T16_14015) | - | 2802922..2803293 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3T16_RS14020 (E3T16_14020) | - | 2803293..2803550 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| E3T16_RS14025 (E3T16_14025) | - | 2803553..2803795 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| E3T16_RS14030 (E3T16_14030) | - | 2803810..2804055 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| E3T16_RS14035 (E3T16_14035) | - | 2804052..2804588 (+) | 537 | WP_000185693.1 | dUTPase | - |
| E3T16_RS14040 (E3T16_14040) | - | 2804625..2804870 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| E3T16_RS14045 (E3T16_14045) | - | 2804867..2805073 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E3T16_RS14050 (E3T16_14050) | rinB | 2805070..2805219 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3T16_RS14055 (E3T16_14055) | - | 2805219..2805419 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| E3T16_RS14060 (E3T16_14060) | - | 2805447..2805863 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| E3T16_RS14065 (E3T16_14065) | - | 2806095..2806394 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=415774 E3T16_RS13995 WP_000934759.1 2800878..2801348(+) (ssbA) [Staphylococcus aureus strain UP_1632]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=415774 E3T16_RS13995 WP_000934759.1 2800878..2801348(+) (ssbA) [Staphylococcus aureus strain UP_1632]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |