Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GTU60_RS18125 Genome accession   NZ_CP047670
Coordinates   3981230..3981748 (-) Length   172 a.a.
NCBI ID   WP_063692165.1    Uniprot ID   -
Organism   Alcaligenes faecalis strain SCSIO B001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3976230..3986748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTU60_RS18110 - 3977031..3977531 (+) 501 WP_045929377.1 sigma-70 family RNA polymerase sigma factor -
  GTU60_RS18115 - 3977552..3978493 (+) 942 WP_233249550.1 FecR domain-containing protein -
  GTU60_RS18120 - 3978573..3981044 (+) 2472 WP_199265180.1 TonB-dependent siderophore receptor -
  GTU60_RS18125 ssb 3981230..3981748 (-) 519 WP_063692165.1 single-stranded DNA-binding protein Machinery gene
  GTU60_RS18130 - 3982009..3983220 (-) 1212 WP_086046156.1 MFS transporter -
  GTU60_RS18135 uvrA 3983332..3986295 (+) 2964 WP_199265895.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18873.89 Da        Isoelectric Point: 5.3412

>NTDB_id=415161 GTU60_RS18125 WP_063692165.1 3981230..3981748(-) (ssb) [Alcaligenes faecalis strain SCSIO B001]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMS
DNLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=415161 GTU60_RS18125 WP_063692165.1 3981230..3981748(-) (ssb) [Alcaligenes faecalis strain SCSIO B001]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCCGGCGAGCGCCGTGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATCGCGGGTGAGTACCTGCGCAAAGGCCGTCCCGTTTACGTAGAAGGT
CGCCTGCGCACCCGTAAATGGACAGGTCAGGATGGTCAGGAGCGTTTCACGACCGAGATCATCGCCGAGCAAATGCAAAT
GCTGGGTGGCCGTGACGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGGTGCAC
CAGCTCCACAACGTGCTCAGCGCCCAGCGCCTCAGCAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCG
GACAATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.053

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.535
  ssb Neisseria meningitidis MC58

47.802

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.506

Multiple sequence alignment