Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   H8S71_RS13575 Genome accession   NZ_CP060417
Coordinates   2640100..2640795 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2635100..2645795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS13550 (H8S71_13545) minD 2636036..2636842 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  H8S71_RS13555 (H8S71_13550) minC 2636844..2637524 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  H8S71_RS13560 (H8S71_13555) mreD 2637577..2638095 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  H8S71_RS13565 (H8S71_13560) mreC 2638092..2638964 (-) 873 WP_038829628.1 rod shape-determining protein MreC -
  H8S71_RS13570 (H8S71_13565) mreB 2638995..2640008 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  H8S71_RS13575 (H8S71_13570) ysxA/radC 2640100..2640795 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  H8S71_RS13580 (H8S71_13575) maf 2640832..2641401 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  H8S71_RS13585 (H8S71_13580) spoIIB 2641554..2642552 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  H8S71_RS13590 (H8S71_13585) comC 2642686..2643432 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  H8S71_RS13595 (H8S71_13590) folC 2643573..2644865 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=415083 H8S71_RS13575 WP_014480455.1 2640100..2640795(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=415083 H8S71_RS13575 WP_014480455.1 2640100..2640795(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis strain ONU 559]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment