Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GTK47_RS04105 Genome accession   NZ_CP047639
Coordinates   895839..896366 (-) Length   175 a.a.
NCBI ID   WP_088494417.1    Uniprot ID   -
Organism   Proteus sp. ZN5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 890839..901366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK47_RS04080 (GTK47_04070) - 893241..893612 (+) 372 WP_006536373.1 diacylglycerol kinase -
  GTK47_RS04085 (GTK47_04075) lexA 893740..894351 (+) 612 WP_165122235.1 transcriptional repressor LexA -
  GTK47_RS04090 (GTK47_04080) - 894513..894768 (+) 256 Protein_779 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  GTK47_RS04095 (GTK47_04085) - 894758..895062 (+) 305 Protein_780 type II toxin-antitoxin system RelE/ParE family toxin -
  GTK47_RS04100 (GTK47_04090) zur 895097..895627 (-) 531 WP_165122236.1 zinc uptake transcriptional repressor Zur -
  GTK47_RS04105 (GTK47_04095) ssb 895839..896366 (-) 528 WP_088494417.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GTK47_RS04110 (GTK47_04100) uvrA 896619..899453 (+) 2835 WP_165122237.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18874.92 Da        Isoelectric Point: 4.9468

>NTDB_id=414791 GTK47_RS04105 WP_088494417.1 895839..896366(-) (ssb) [Proteus sp. ZN5]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGGQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PNNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=414791 GTK47_RS04105 WP_088494417.1 895839..896366(-) (ssb) [Proteus sp. ZN5]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAATTTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAGTTACAAACACGTAAATGGCAAGACCAAAGCGGTCAAGACAGATATAGCACTGAAGTTGTTGTTAATATTGG
TGGCTCAATGCAGATGTTAGGCGGCCGTGGTGGTCAAGATGGCGCTCCATCCCAAGGTGGCCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGCACAATCTCGCCCAGCACAACAACCTGCTGCGGCCCCAGCA
CCAAACAATGAACCACCTATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.514

100

0.777
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497

Multiple sequence alignment