Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GT733_RS16350 | Genome accession | NZ_CP047589 |
| Coordinates | 3559582..3560106 (+) | Length | 174 a.a. |
| NCBI ID | WP_004249162.1 | Uniprot ID | A0A1Z1SRL1 |
| Organism | Proteus mirabilis strain SNYG35 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3509327..3561781 | 3559582..3560106 | within | 0 |
Gene organization within MGE regions
Location: 3509327..3561781
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT733_RS16100 (GT733_16170) | - | 3509327..3510973 (-) | 1647 | WP_206092375.1 | hypothetical protein | - |
| GT733_RS16105 (GT733_16175) | - | 3510960..3511520 (-) | 561 | WP_143475709.1 | hypothetical protein | - |
| GT733_RS16110 (GT733_16180) | - | 3511531..3512253 (-) | 723 | WP_206092373.1 | hypothetical protein | - |
| GT733_RS16115 (GT733_16185) | - | 3512250..3512672 (-) | 423 | WP_049212315.1 | tail fiber assembly protein | - |
| GT733_RS16120 (GT733_16190) | - | 3512674..3514602 (-) | 1929 | WP_206092371.1 | phage tail protein | - |
| GT733_RS16125 (GT733_16195) | - | 3514606..3515163 (-) | 558 | WP_049212312.1 | phage tail protein | - |
| GT733_RS16130 (GT733_16200) | - | 3515156..3516340 (-) | 1185 | WP_206092369.1 | baseplate J/gp47 family protein | - |
| GT733_RS16135 (GT733_16205) | - | 3516330..3516665 (-) | 336 | WP_060557617.1 | DUF2590 family protein | - |
| GT733_RS16140 (GT733_16210) | - | 3516676..3519192 (-) | 2517 | WP_206092367.1 | phage tail tape measure protein | - |
| GT733_RS19555 | - | 3519192..3519335 (-) | 144 | WP_165544879.1 | DUF6890 family protein | - |
| GT733_RS16145 (GT733_16215) | - | 3519380..3519649 (-) | 270 | WP_049220759.1 | putative phage tail assembly chaperone | - |
| GT733_RS16150 (GT733_16220) | - | 3519758..3520132 (-) | 375 | WP_102780817.1 | hypothetical protein | - |
| GT733_RS16155 (GT733_16225) | - | 3520129..3520554 (-) | 426 | WP_071233399.1 | structural protein | - |
| GT733_RS16160 (GT733_16230) | - | 3520551..3520844 (-) | 294 | WP_036907276.1 | phage holin family protein | - |
| GT733_RS16165 (GT733_16235) | - | 3520859..3521311 (-) | 453 | WP_036907273.1 | DUF2597 family protein | - |
| GT733_RS16170 (GT733_16240) | - | 3521311..3522429 (-) | 1119 | WP_196543745.1 | DUF2586 domain-containing protein | - |
| GT733_RS16175 (GT733_16245) | - | 3522444..3523142 (-) | 699 | WP_206092365.1 | hypothetical protein | - |
| GT733_RS16180 (GT733_16250) | - | 3523139..3523615 (-) | 477 | WP_071233402.1 | phage tail protein | - |
| GT733_RS16185 (GT733_16255) | - | 3523612..3524064 (-) | 453 | WP_036907264.1 | head completion/stabilization protein | - |
| GT733_RS16190 (GT733_16260) | gpM | 3524399..3525103 (-) | 705 | WP_049218878.1 | phage terminase small subunit | - |
| GT733_RS16195 (GT733_16265) | - | 3525109..3526140 (-) | 1032 | WP_049218876.1 | phage major capsid protein, P2 family | - |
| GT733_RS16200 (GT733_16270) | - | 3526151..3526987 (-) | 837 | WP_049212290.1 | GPO family capsid scaffolding protein | - |
| GT733_RS16205 (GT733_16275) | - | 3527149..3528936 (+) | 1788 | WP_206092363.1 | terminase large subunit domain-containing protein | - |
| GT733_RS16210 (GT733_16280) | - | 3528936..3529970 (+) | 1035 | WP_174815125.1 | phage portal protein | - |
| GT733_RS16215 (GT733_16285) | - | 3529967..3530275 (+) | 309 | WP_036907246.1 | ogr/Delta-like zinc finger family protein | - |
| GT733_RS16220 (GT733_16290) | - | 3530277..3530459 (-) | 183 | WP_036907243.1 | hypothetical protein | - |
| GT733_RS16225 (GT733_16295) | - | 3530778..3532970 (-) | 2193 | WP_206092361.1 | replication endonuclease | - |
| GT733_RS16230 (GT733_16300) | - | 3532972..3533223 (-) | 252 | WP_036907235.1 | DUF2732 family protein | - |
| GT733_RS16235 (GT733_16305) | - | 3533300..3533647 (-) | 348 | WP_088206999.1 | DUF5347 domain-containing protein | - |
| GT733_RS16240 (GT733_16310) | - | 3533812..3534321 (-) | 510 | WP_088206998.1 | phage regulatory CII family protein | - |
| GT733_RS16245 (GT733_16315) | - | 3534351..3534575 (-) | 225 | WP_036907225.1 | helix-turn-helix transcriptional regulator | - |
| GT733_RS16250 (GT733_16320) | - | 3534725..3535315 (+) | 591 | WP_052124619.1 | phage repressor protein CI | - |
| GT733_RS16255 (GT733_16325) | - | 3535330..3535752 (+) | 423 | WP_036907222.1 | hypothetical protein | - |
| GT733_RS16260 (GT733_16330) | - | 3535757..3536788 (+) | 1032 | WP_088206997.1 | tyrosine-type recombinase/integrase | - |
| GT733_RS16265 (GT733_16335) | - | 3536882..3538258 (+) | 1377 | WP_270049394.1 | fimbria/pilus outer membrane usher protein | - |
| GT733_RS16270 (GT733_16340) | - | 3538258..3538776 (+) | 519 | WP_004245882.1 | fimbrial protein | - |
| GT733_RS16275 (GT733_16345) | - | 3538776..3539849 (+) | 1074 | WP_202054673.1 | fimbrial protein | - |
| GT733_RS16280 (GT733_16350) | - | 3539876..3540193 (+) | 318 | WP_004245886.1 | helix-turn-helix domain-containing protein | - |
| GT733_RS16285 (GT733_16355) | potD | 3540326..3541369 (-) | 1044 | WP_004245887.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| GT733_RS16290 (GT733_16360) | potC | 3541486..3542265 (-) | 780 | WP_004245888.1 | spermidine/putrescine ABC transporter permease PotC | - |
| GT733_RS16295 (GT733_16365) | potB | 3542262..3543122 (-) | 861 | WP_004250112.1 | spermidine/putrescine ABC transporter permease PotB | - |
| GT733_RS16300 (GT733_16370) | potA | 3543106..3544221 (-) | 1116 | WP_004245891.1 | spermidine/putrescine ABC transporter ATP-binding protein PotA | - |
| GT733_RS16305 (GT733_16375) | - | 3544665..3545939 (-) | 1275 | WP_223878647.1 | S8 family peptidase | - |
| GT733_RS16310 (GT733_16380) | dusA | 3546896..3547930 (+) | 1035 | WP_012368489.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| GT733_RS16315 (GT733_16385) | - | 3548037..3549020 (-) | 984 | WP_004245895.1 | NADPH:quinone reductase | - |
| GT733_RS16320 (GT733_16390) | dnaB | 3549188..3550597 (+) | 1410 | WP_004245896.1 | replicative DNA helicase | - |
| GT733_RS16325 (GT733_16395) | alr | 3550638..3551729 (+) | 1092 | WP_036907212.1 | alanine racemase | - |
| GT733_RS16330 (GT733_16400) | - | 3551785..3552978 (+) | 1194 | WP_004249167.1 | aromatic amino acid transaminase | - |
| GT733_RS16335 (GT733_16405) | - | 3553100..3554449 (-) | 1350 | WP_004245900.1 | serine dehydratase subunit alpha family protein | - |
| GT733_RS16340 (GT733_16410) | - | 3554511..3555842 (-) | 1332 | WP_004249166.1 | amino acid permease | - |
| GT733_RS16345 (GT733_16415) | uvrA | 3556495..3559329 (-) | 2835 | WP_036919181.1 | excinuclease ABC subunit UvrA | - |
| GT733_RS16350 (GT733_16420) | ssb | 3559582..3560106 (+) | 525 | WP_004249162.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| GT733_RS16355 (GT733_16425) | zur | 3560447..3560977 (+) | 531 | WP_049257468.1 | zinc uptake transcriptional repressor Zur | - |
| GT733_RS16360 (GT733_16430) | lexA | 3561170..3561781 (-) | 612 | WP_004245906.1 | transcriptional repressor LexA | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18830.90 Da Isoelectric Point: 4.9468
>NTDB_id=414359 GT733_RS16350 WP_004249162.1 3559582..3560106(+) (ssb) [Proteus mirabilis strain SNYG35]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=414359 GT733_RS16350 WP_004249162.1 3559582..3560106(+) (ssb) [Proteus mirabilis strain SNYG35]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCAGCGGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCAGCGGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.892 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
57.065 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.489 |