Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GT391_RS11105 Genome accession   NZ_CP047495
Coordinates   2483318..2483860 (-) Length   180 a.a.
NCBI ID   WP_010279283.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain 1692     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2478318..2488860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT391_RS11085 (GT391_11085) - 2478523..2478981 (-) 459 WP_010279291.1 GNAT family N-acetyltransferase -
  GT391_RS11090 (GT391_11090) - 2479317..2480582 (+) 1266 WP_010279288.1 MFS transporter -
  GT391_RS11095 (GT391_11095) - 2480584..2482017 (+) 1434 WP_085996928.1 glycoside hydrolase family 32 protein -
  GT391_RS11100 (GT391_11100) - 2482196..2483191 (-) 996 WP_010279285.1 LacI family DNA-binding transcriptional regulator -
  GT391_RS11105 (GT391_11105) ssb 2483318..2483860 (-) 543 WP_010279283.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GT391_RS21725 - 2483841..2484035 (-) 195 WP_158527647.1 hypothetical protein -
  GT391_RS11110 (GT391_11110) uvrA 2484110..2486944 (+) 2835 WP_010279281.1 excinuclease ABC subunit UvrA -
  GT391_RS11115 (GT391_11115) - 2486960..2487378 (+) 419 Protein_2165 secondary thiamine-phosphate synthase enzyme YjbQ -
  GT391_RS11120 (GT391_11120) cas6f 2488114..2488668 (-) 555 WP_010279279.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19131.08 Da        Isoelectric Point: 5.2456

>NTDB_id=413864 GT391_RS11105 WP_010279283.1 2483318..2483860(-) (ssb) [Pectobacterium brasiliense strain 1692]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQSGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=413864 GT391_RS11105 WP_010279283.1 2483318..2483860(-) (ssb) [Pectobacterium brasiliense strain 1692]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGAAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGTCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAGG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGCCCTGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.756
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.629

98.889

0.461
  ssb Neisseria gonorrhoeae MS11

46.629

98.889

0.461

Multiple sequence alignment