Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6A80_RS25540 | Genome accession | NZ_CP060241 |
| Coordinates | 5558496..5558993 (-) | Length | 165 a.a. |
| NCBI ID | WP_003114685.1 | Uniprot ID | A0A0H2ZGD4 |
| Organism | Pseudomonas aeruginosa strain C-I-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5553496..5563993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6A80_RS25520 (I6A80_005230) | pchD | 5554280..5555923 (+) | 1644 | WP_003118945.1 | pyochelin biosynthesis salicyl-AMP ligase PchD | - |
| I6A80_RS25525 (I6A80_005231) | pchC | 5555920..5556675 (+) | 756 | WP_003118944.1 | pyochelin biosynthesis editing thioesterase PchC | - |
| I6A80_RS25530 (I6A80_005232) | pchB | 5556675..5556980 (+) | 306 | WP_003106950.1 | isochorismate lyase PchB | - |
| I6A80_RS25535 (I6A80_005233) | pchA | 5556977..5558407 (+) | 1431 | WP_003114686.1 | isochorismate synthase PchA | - |
| I6A80_RS25540 (I6A80_005234) | ssb | 5558496..5558993 (-) | 498 | WP_003114685.1 | single-stranded DNA-binding protein | Machinery gene |
| I6A80_RS25545 (I6A80_005235) | - | 5559010..5560398 (-) | 1389 | WP_196426302.1 | MFS transporter | - |
| I6A80_RS25550 (I6A80_005236) | uvrA | 5560612..5563449 (+) | 2838 | WP_003118151.1 | excinuclease ABC subunit UvrA | Machinery gene |
| I6A80_RS25555 (I6A80_005237) | bfr | 5563521..5563985 (-) | 465 | WP_003093668.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18557.46 Da Isoelectric Point: 5.2781
>NTDB_id=413836 I6A80_RS25540 WP_003114685.1 5558496..5558993(-) (ssb) [Pseudomonas aeruginosa strain C-I-1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF
Nucleotide
Download Length: 498 bp
>NTDB_id=413836 I6A80_RS25540 WP_003114685.1 5558496..5558993(-) (ssb) [Pseudomonas aeruginosa strain C-I-1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.659 |
100 |
0.636 |
| ssb | Glaesserella parasuis strain SC1401 |
52.486 |
100 |
0.576 |
| ssb | Neisseria gonorrhoeae MS11 |
48.045 |
100 |
0.521 |
| ssb | Neisseria meningitidis MC58 |
47.486 |
100 |
0.515 |