Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GTQ55_RS16600 Genome accession   NZ_CP047491
Coordinates   3948368..3949444 (-) Length   358 a.a.
NCBI ID   WP_161859732.1    Uniprot ID   -
Organism   Microbulbifer hydrolyticus strain IRE-31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3943368..3954444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ55_RS16575 (GTQ55_16585) aroK 3943884..3944405 (-) 522 WP_202620719.1 shikimate kinase AroK -
  GTQ55_RS16580 (GTQ55_16590) pilQ 3944405..3946624 (-) 2220 WP_161859728.1 type IV pilus secretin PilQ family protein -
  GTQ55_RS16585 (GTQ55_16595) - 3946627..3947154 (-) 528 WP_161859729.1 pilus assembly protein PilP -
  GTQ55_RS16590 (GTQ55_16600) - 3947151..3947771 (-) 621 WP_161859730.1 type 4a pilus biogenesis protein PilO -
  GTQ55_RS16595 (GTQ55_16605) - 3947774..3948364 (-) 591 WP_161859731.1 PilN domain-containing protein -
  GTQ55_RS16600 (GTQ55_16610) pilM 3948368..3949444 (-) 1077 WP_161859732.1 pilus assembly protein PilM Machinery gene
  GTQ55_RS16605 (GTQ55_16615) - 3949599..3952292 (+) 2694 WP_161859733.1 penicillin-binding protein 1A -
  GTQ55_RS16610 (GTQ55_16620) - 3952375..3952866 (-) 492 WP_161859734.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38930.13 Da        Isoelectric Point: 4.3560

>NTDB_id=413788 GTQ55_RS16600 WP_161859732.1 3948368..3949444(-) (pilM) [Microbulbifer hydrolyticus strain IRE-31]
MGMLPFLNKGPKAMLGLDISSTSVKLLELSRSGDKYRVESYATESLPPNAVVDKNINDVSAIAEAIRKVVRRSKTRLRQA
AVAVSGSAVITKTLDMPADLSDDALEAQIALEADQYIPYPLDEVNLDFEVQGPSEKGEGQVEVLLAACRSENVEQRVSAL
GEADLQPGVVDVEAYAIERAYTLMDNQFPAQEQLVVAVIDIGATMSALSVMVDGRTVYTREQLFGGRQLTDEIQRRYGLS
SEEATLAKRQGGSGLPDDYYPEVLEPFRDAVVQQVTRSLQFFYSSTSYSDVDYILLGGGVAAMDGLAELVGQKLNKPTMV
ANPFRDMSVASRVNRQALASEAPSLMIAAGLAMREREF

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=413788 GTQ55_RS16600 WP_161859732.1 3948368..3949444(-) (pilM) [Microbulbifer hydrolyticus strain IRE-31]
ATGGGGATGCTCCCTTTTCTCAATAAGGGCCCGAAAGCAATGCTTGGGCTCGATATTAGCTCCACCTCGGTAAAGTTGCT
CGAACTGAGTCGCAGTGGCGACAAATACCGCGTGGAAAGCTATGCAACCGAGTCTCTGCCTCCGAATGCGGTAGTGGATA
AAAATATCAATGATGTAAGCGCCATCGCCGAGGCTATACGCAAGGTGGTGCGGCGTTCCAAGACGCGCCTGCGTCAGGCT
GCAGTGGCTGTATCCGGTTCAGCGGTCATAACCAAGACGCTGGACATGCCCGCCGATCTCTCCGACGACGCGCTGGAAGC
CCAGATCGCGCTGGAGGCGGATCAGTACATTCCGTACCCGCTCGATGAGGTGAACCTGGACTTTGAAGTGCAGGGCCCCT
CGGAAAAGGGTGAGGGTCAGGTCGAGGTTTTGCTGGCTGCCTGTCGCAGCGAGAACGTTGAGCAGCGTGTTTCTGCGCTG
GGCGAGGCGGACTTGCAGCCGGGGGTGGTGGATGTGGAAGCCTACGCCATCGAGCGCGCCTACACACTGATGGATAACCA
GTTCCCTGCCCAGGAGCAGCTGGTGGTGGCCGTTATCGACATCGGAGCGACCATGAGCGCGCTGTCGGTAATGGTAGATG
GTCGCACGGTTTACACCCGCGAGCAGTTGTTCGGTGGGCGCCAGCTGACCGATGAGATTCAGCGCCGTTATGGTCTGTCC
TCGGAAGAGGCGACTCTGGCCAAGCGCCAGGGCGGCAGTGGCCTGCCGGATGACTACTACCCCGAGGTGCTGGAGCCCTT
CCGCGACGCGGTCGTGCAGCAGGTAACGCGTTCCCTGCAGTTTTTCTACTCTTCCACCTCCTACAGCGATGTGGATTACA
TCCTTCTTGGCGGCGGCGTCGCCGCCATGGACGGCCTTGCCGAGCTGGTGGGTCAGAAGCTGAATAAGCCCACCATGGTG
GCCAATCCTTTCCGGGATATGAGTGTTGCATCCCGTGTAAATCGCCAGGCGCTGGCCAGTGAGGCACCCTCGCTGATGAT
TGCCGCCGGCCTCGCGATGCGCGAGCGGGAGTTCTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.273

98.324

0.514
  comM Acinetobacter nosocomialis M2

52.273

98.324

0.514
  comM Acinetobacter baylyi ADP1

47.443

98.324

0.466
  pilM Legionella pneumophila strain ERS1305867

44.944

99.441

0.447

Multiple sequence alignment