Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GTQ55_RS14565 Genome accession   NZ_CP047491
Coordinates   3420142..3420726 (-) Length   194 a.a.
NCBI ID   WP_161859397.1    Uniprot ID   A0A6P1TEJ6
Organism   Microbulbifer hydrolyticus strain IRE-31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3415142..3425726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTQ55_RS14545 (GTQ55_14550) galU 3416215..3417051 (-) 837 WP_161859393.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GTQ55_RS14550 (GTQ55_14555) fabA 3417312..3417836 (+) 525 WP_161859394.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  GTQ55_RS14555 (GTQ55_14560) fabB 3417929..3419152 (+) 1224 WP_161859395.1 beta-ketoacyl-ACP synthase I -
  GTQ55_RS14560 (GTQ55_14565) - 3419276..3420124 (-) 849 WP_161859396.1 sugar nucleotide-binding protein -
  GTQ55_RS14565 (GTQ55_14570) ssb 3420142..3420726 (-) 585 WP_161859397.1 single-stranded DNA-binding protein Machinery gene
  GTQ55_RS14570 (GTQ55_14575) - 3420936..3422108 (-) 1173 WP_161859398.1 MFS transporter -
  GTQ55_RS14575 (GTQ55_14580) - 3422222..3423625 (-) 1404 WP_183946681.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21046.97 Da        Isoelectric Point: 5.2957

>NTDB_id=413786 GTQ55_RS14565 WP_161859397.1 3420142..3420726(-) (ssb) [Microbulbifer hydrolyticus strain IRE-31]
MARGVNKVILIGNLGGDPETRYLPSGGAVTNITVATSETWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYLE
GSLRTRKWQDKTSGQDRYTTEIVASEMQMLDGRGEQGGGYQQGGGQGFQQQGGGYAQQGPQGGGYQDEYSQGRSAPSPMA
PSNQPQPGQPQNKPAGNQPPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=413786 GTQ55_RS14565 WP_161859397.1 3420142..3420726(-) (ssb) [Microbulbifer hydrolyticus strain IRE-31]
ATGGCCAGGGGCGTAAACAAAGTAATTCTGATTGGCAACCTGGGCGGTGACCCGGAAACCCGCTATTTGCCCAGCGGCGG
CGCCGTTACCAATATCACCGTGGCGACTTCCGAAACCTGGAAAGACAAGCAGACCGGTCAACAGCAGGAGCGCACCGAGT
GGCACCGCGTGGTGTTCTTCAATCGCCTGGCCGAGATCGCCGGTGAGTATCTGCGCAAAGGCAGCAAAGTGTATCTGGAA
GGTTCCCTGCGCACGCGCAAATGGCAGGACAAGACCTCCGGCCAGGACCGCTACACCACCGAGATTGTCGCCAGCGAAAT
GCAGATGCTGGACGGCCGCGGTGAGCAGGGTGGTGGCTACCAGCAGGGTGGCGGTCAGGGTTTCCAGCAGCAGGGTGGTG
GTTACGCCCAGCAGGGACCGCAGGGTGGCGGCTACCAGGACGAGTACTCCCAGGGCCGCTCCGCACCGTCCCCGATGGCG
CCTTCCAATCAGCCCCAGCCAGGCCAGCCCCAGAACAAGCCTGCGGGCAACCAGCCGCCGGCGGGTGGCTTCGATAACAG
CTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1TEJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.446

100

0.577
  ssb Glaesserella parasuis strain SC1401

54.45

98.454

0.536
  ssb Neisseria gonorrhoeae MS11

48.187

99.485

0.479
  ssb Neisseria meningitidis MC58

47.668

99.485

0.474

Multiple sequence alignment