Detailed information NTG0413783

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GTQ55_RS12885
• Genome accession: NZ_CP047491
• Coordinates: 3007674..3008558 (+)
• Length: 294 a.a.
• NCBI ID: WP_161859106.1
• Uniprot ID: -
• Organism: Microbulbifer hydrolyticus strain IRE-31
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3002674..3013558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTQ55_RS12870 (GTQ55_12875)	-	3003606..3003962 (-)	357	WP_420028978.1	pilin	-
GTQ55_RS18140	-	3003977..3004088 (-)	112	Protein_2532	pilin	-
GTQ55_RS12875 (GTQ55_12880)	pilB	3004598..3006310 (+)	1713	WP_161859104.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GTQ55_RS12880 (GTQ55_12885)	pilC	3006445..3007662 (+)	1218	WP_161859105.1	type II secretion system F family protein	Machinery gene
GTQ55_RS12885 (GTQ55_12890)	pilD	3007674..3008558 (+)	885	WP_161859106.1	prepilin peptidase	Machinery gene
GTQ55_RS12890 (GTQ55_12895)	coaE	3008562..3009173 (+)	612	WP_161859107.1	dephospho-CoA kinase	-
GTQ55_RS12895 (GTQ55_12900)	yacG	3009188..3009409 (+)	222	WP_161859108.1	DNA gyrase inhibitor YacG	-
GTQ55_RS12900 (GTQ55_12905)	-	3009471..3010301 (-)	831	WP_161859109.1	hypothetical protein	-
GTQ55_RS12905 (GTQ55_12910)	-	3010539..3011813 (-)	1275	WP_161859110.1	hypothetical protein	-
GTQ55_RS12910 (GTQ55_12915)	-	3011941..3012438 (-)	498	WP_161859111.1	protein disulfide oxidoreductase	-
GTQ55_RS12915 (GTQ55_12920)	tsaA	3012435..3013166 (-)	732	WP_161859112.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 32541.54 Da
• Isoelectric Point: 7.0919

>NTDB_id=413783 GTQ55_RS12885 WP_161859106.1 3007674..3008558(+) (pilD) [Microbulbifer hydrolyticus strain IRE-31]
MTDLLHTHPALLISSAFILGLLIGSFLNVVIHRLPIMMEREYQRDFYSYFEKTPSAEDQKELAQTYNLVLPHSHCPKCET
VIKPWQNIPVISYLLLRGKCGHCDAPISKRYPLVELATGILTAIVVWQLGFTWQALAGVFFTWALIALTGIDFDKQLLPD
NITLPLLWAGLLINIWGVFAPLQDAVIGAIAGYLALWSVFHIFKLVTGKEGMGAGDFKILAAIGAWFGWQVLPMVILLSA
AVGALVGILWTLVSGRDKNLPIAFGPYLAGAAWIAMLWGEQIMGWYFRISGLSS

Nucleotide

• Length: 885 bp

>NTDB_id=413783 GTQ55_RS12885 WP_161859106.1 3007674..3008558(+) (pilD) [Microbulbifer hydrolyticus strain IRE-31]
ATGACCGATCTTCTTCATACCCACCCAGCGCTGCTAATAAGCAGCGCTTTTATTTTAGGCCTGCTCATCGGCAGCTTCCT
AAATGTCGTCATCCACCGCCTGCCCATCATGATGGAGCGCGAATACCAGCGGGACTTTTACAGCTATTTCGAGAAAACTC
CCTCCGCCGAAGACCAGAAAGAACTGGCGCAGACCTACAACCTGGTACTGCCCCACTCCCACTGTCCCAAGTGCGAGACG
GTCATCAAGCCCTGGCAGAATATCCCGGTCATCAGCTACCTGCTGCTGCGGGGTAAATGCGGCCACTGCGACGCGCCCAT
CTCCAAACGCTATCCGCTGGTGGAGCTGGCTACCGGTATTCTTACCGCCATTGTGGTCTGGCAGCTGGGCTTTACCTGGC
AGGCACTGGCCGGGGTATTTTTTACCTGGGCATTGATCGCGCTGACCGGGATCGATTTCGACAAGCAGCTGCTGCCAGAC
AATATCACCCTGCCCCTGCTGTGGGCGGGTCTGTTGATCAATATCTGGGGTGTGTTTGCACCTCTGCAGGACGCGGTGAT
CGGGGCCATCGCCGGGTACCTGGCGCTGTGGAGTGTTTTTCATATCTTCAAGCTGGTTACCGGTAAGGAAGGTATGGGCG
CGGGGGATTTCAAGATACTTGCGGCTATTGGTGCCTGGTTTGGCTGGCAGGTGTTGCCGATGGTGATCCTGCTCTCCGCC
GCCGTGGGCGCACTGGTGGGTATCCTTTGGACACTGGTTTCCGGGCGGGACAAGAACCTGCCCATCGCCTTCGGCCCCTA
CCTCGCCGGTGCGGCCTGGATTGCCATGCTGTGGGGTGAGCAGATTATGGGGTGGTACTTCCGTATTTCCGGGCTGAGTA
GCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-128)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.35	97.279	0.49
pilD	Vibrio cholerae strain A1552	49.129	97.619	0.48
pilD	Acinetobacter baumannii D1279779	50.719	94.558	0.48
pilD	Acinetobacter nosocomialis M2	50.36	94.558	0.476
pilD	Neisseria gonorrhoeae MS11	49.635	93.197	0.463