Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GTW28_RS12550 | Genome accession | NZ_CP047485 |
| Coordinates | 2439811..2440146 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain BJQ0005 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2434811..2445146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTW28_RS12530 (GTW28_12530) | gcvT | 2435403..2436491 (-) | 1089 | WP_003230205.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GTW28_RS12535 (GTW28_12535) | hepAA | 2436933..2438606 (+) | 1674 | WP_003230203.1 | SNF2-related protein | - |
| GTW28_RS12540 (GTW28_12540) | yqhG | 2438627..2439421 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| GTW28_RS12545 (GTW28_12545) | sinI | 2439604..2439777 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| GTW28_RS12550 (GTW28_12550) | sinR | 2439811..2440146 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| GTW28_RS12555 (GTW28_12555) | tasA | 2440239..2441024 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| GTW28_RS12560 (GTW28_12560) | sipW | 2441088..2441660 (-) | 573 | WP_003230181.1 | signal peptidase I SipW | - |
| GTW28_RS12565 (GTW28_12565) | tapA | 2441644..2442405 (-) | 762 | WP_003230180.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GTW28_RS12570 (GTW28_12570) | yqzG | 2442677..2443003 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| GTW28_RS12575 (GTW28_12575) | spoIITA | 2443045..2443224 (-) | 180 | WP_029726723.1 | YqzE family protein | - |
| GTW28_RS12580 (GTW28_12580) | comGG | 2443296..2443670 (-) | 375 | WP_014480253.1 | ComG operon protein ComGG | Machinery gene |
| GTW28_RS12585 (GTW28_12585) | comGF | 2443671..2444054 (-) | 384 | WP_046160582.1 | ComG operon protein ComGF | Machinery gene |
| GTW28_RS12590 (GTW28_12590) | comGE | 2444080..2444427 (-) | 348 | WP_046381178.1 | ComG operon protein 5 | Machinery gene |
| GTW28_RS12595 (GTW28_12595) | comGD | 2444411..2444842 (-) | 432 | WP_046381179.1 | comG operon protein ComGD | Machinery gene |
| GTW28_RS12600 (GTW28_12600) | comGC | 2444832..2445128 (-) | 297 | WP_014477332.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=413683 GTW28_RS12550 WP_003226345.1 2439811..2440146(+) (sinR) [Bacillus subtilis strain BJQ0005]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=413683 GTW28_RS12550 WP_003226345.1 2439811..2440146(+) (sinR) [Bacillus subtilis strain BJQ0005]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |