Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GTW28_RS06010 Genome accession   NZ_CP047485
Coordinates   1134792..1135370 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BJQ0005     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129792..1140370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS05990 (GTW28_05990) hemAT 1130303..1131601 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  GTW28_RS05995 (GTW28_05995) comW 1131740..1133269 (-) 1530 WP_038428744.1 FAD-dependent oxidoreductase -
  GTW28_RS06000 (GTW28_06000) yhxC 1133381..1134238 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  GTW28_RS06005 (GTW28_06005) yhzC 1134266..1134499 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  GTW28_RS06010 (GTW28_06010) comK 1134792..1135370 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  GTW28_RS06015 (GTW28_06015) yhxD 1135417..1136316 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  GTW28_RS06020 (GTW28_06020) yhjA 1136533..1136802 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  GTW28_RS06025 (GTW28_06025) yhjB 1136845..1138314 (-) 1470 WP_046380906.1 sodium:solute symporter -
  GTW28_RS06030 (GTW28_06030) yhjC 1138311..1138511 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GTW28_RS06035 (GTW28_06035) - 1138710..1139081 (-) 372 WP_014476361.1 hypothetical protein -
  GTW28_RS06040 (GTW28_06040) yhjE 1139233..1139856 (+) 624 WP_046380907.1 TVP38/TMEM64 family protein -
  GTW28_RS06045 (GTW28_06045) lepB 1139858..1140364 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=413660 GTW28_RS06010 WP_003245329.1 1134792..1135370(+) (comK) [Bacillus subtilis strain BJQ0005]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=413660 GTW28_RS06010 WP_003245329.1 1134792..1135370(+) (comK) [Bacillus subtilis strain BJQ0005]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment