Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   HMPREF0833_RS00315 Genome accession   NC_015678
Coordinates   45889..46548 (-) Length   219 a.a.
NCBI ID   WP_013903207.1    Uniprot ID   -
Organism   Streptococcus parasanguinis ATCC 15912     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 40889..51548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0833_RS00295 (HMPREF0833_10047) - 42085..42660 (+) 576 WP_003017966.1 YutD-like domain-containing protein -
  HMPREF0833_RS00300 (HMPREF0833_10048) rlmN 42667..43755 (+) 1089 WP_003017924.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  HMPREF0833_RS00305 (HMPREF0833_10049) - 43742..44269 (+) 528 WP_013903206.1 VanZ family protein -
  HMPREF0833_RS00310 (HMPREF0833_10050) trpB 44694..45881 (+) 1188 WP_003017923.1 tryptophan synthase subunit beta -
  HMPREF0833_RS00315 (HMPREF0833_10051) cclA/cilC 45889..46548 (-) 660 WP_013903207.1 A24 family peptidase Machinery gene
  HMPREF0833_RS00320 (HMPREF0833_10052) - 46636..46854 (+) 219 WP_003017930.1 YqgQ family protein -
  HMPREF0833_RS00325 (HMPREF0833_10053) - 46854..47237 (+) 384 WP_013903208.1 rhodanese-like domain-containing protein -
  HMPREF0833_RS00330 (HMPREF0833_10054) - 47280..48005 (-) 726 WP_013903209.1 16S rRNA pseudouridine(516) synthase -
  HMPREF0833_RS00335 (HMPREF0833_10055) typA 48185..50032 (+) 1848 WP_003017941.1 translational GTPase TypA -
  HMPREF0833_RS00340 (HMPREF0833_10056) - 50056..50310 (+) 255 WP_003017963.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25027.09 Da        Isoelectric Point: 7.5488

>NTDB_id=41361 HMPREF0833_RS00315 WP_013903207.1 45889..46548(-) (cclA/cilC) [Streptococcus parasanguinis ATCC 15912]
MINFYFFTIGTCIASFLGLVVDRFPNQSILAPRSHCDQCQHVLGVWDLIPIISQLLHRFRCHYCHQTYPFWYCLFEVWSG
LLFLACANGFLSLPQLLTLLGAAVLAIYDLRFMEYPLFIWCCLHALVLFLSSSNLLMLVFLLLAIGAHFFFIGIGAGDFL
LLATFSLSFSSTQILILIQIASILGILVFALKKERDRIPFVPCLFLSYHALLLYTMFCR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=41361 HMPREF0833_RS00315 WP_013903207.1 45889..46548(-) (cclA/cilC) [Streptococcus parasanguinis ATCC 15912]
ATGATCAACTTTTATTTTTTTACCATCGGTACTTGTATCGCCTCTTTTTTGGGGCTAGTTGTCGATCGTTTTCCAAACCA
ATCTATTCTCGCTCCTCGCAGTCATTGTGATCAATGTCAGCACGTCCTTGGAGTTTGGGATCTCATCCCCATTATATCGC
AACTACTCCATCGTTTTCGCTGCCACTATTGTCATCAGACCTACCCATTTTGGTACTGCCTTTTTGAGGTCTGGAGTGGC
CTACTCTTTTTAGCCTGCGCCAATGGTTTCCTTTCTCTGCCTCAACTTCTAACACTACTGGGAGCTGCCGTTTTAGCCAT
TTATGACCTTCGCTTTATGGAATACCCTTTATTCATCTGGTGCTGTCTCCATGCCCTGGTCCTCTTTTTATCCAGTAGTA
ATCTCCTCATGCTGGTCTTTTTACTCCTTGCGATCGGAGCTCACTTTTTCTTTATCGGAATAGGAGCAGGAGATTTTCTC
TTACTAGCTACCTTTTCGCTAAGCTTTTCTTCTACCCAGATCCTCATTCTCATTCAGATCGCATCCATCTTAGGCATTCT
CGTCTTTGCTCTCAAAAAAGAAAGAGACCGGATTCCCTTTGTTCCCTGTCTCTTTCTCAGTTATCACGCTTTACTGCTTT
ATACAATGTTTTGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

54.106

94.521

0.511
  cclA/cilC Streptococcus mitis NCTC 12261

54.106

94.521

0.511
  cclA/cilC Streptococcus pneumoniae TIGR4

53.623

94.521

0.507
  cclA/cilC Streptococcus pneumoniae Rx1

53.623

94.521

0.507
  cclA/cilC Streptococcus pneumoniae D39

53.623

94.521

0.507
  cclA/cilC Streptococcus pneumoniae R6

53.623

94.521

0.507

Multiple sequence alignment