Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GM320_RS11430 Genome accession   NZ_CP047422
Coordinates   2369776..2370510 (+) Length   244 a.a.
NCBI ID   WP_144191017.1    Uniprot ID   -
Organism   Shewanella algae strain 18064-CSB-B-B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2364776..2375510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM320_RS11415 (GM320_11415) - 2364972..2365322 (-) 351 WP_129586019.1 hypothetical protein -
  GM320_RS11420 (GM320_11420) uvrA 2365330..2368152 (-) 2823 WP_159352794.1 excinuclease ABC subunit UvrA -
  GM320_RS11425 (GM320_11425) - 2368374..2369741 (+) 1368 WP_025887974.1 MFS transporter -
  GM320_RS11430 (GM320_11430) ssb 2369776..2370510 (+) 735 WP_144191017.1 single-stranded DNA-binding protein Machinery gene
  GM320_RS11435 (GM320_11435) fdnG 2371396..2374410 (+) 3015 WP_099049539.1 formate dehydrogenase-N subunit alpha -
  GM320_RS11440 (GM320_11440) fdxH 2374413..2375336 (+) 924 WP_025887978.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26879.29 Da        Isoelectric Point: 5.9130

>NTDB_id=413454 GM320_RS11430 WP_144191017.1 2369776..2370510(+) (ssb) [Shewanella algae strain 18064-CSB-B-B]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDD
DIPF

Nucleotide


Download         Length: 735 bp        

>NTDB_id=413454 GM320_RS11430 WP_144191017.1 2369776..2370510(+) (ssb) [Shewanella algae strain 18064-CSB-B-B]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAAGACCAGCAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGCAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCACAACAGCCACAACAGCCACAACAGCCACAACAGCAGTACAACGCGCC
GCAGCAGCAAAGCTATGGTCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCCGCGCCGCAACAACAGGCTG
CTCCGCAGCAGCGTCCGGCACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGAT
GATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.658

79.098

0.488
  ssb Glaesserella parasuis strain SC1401

45.228

98.77

0.447
  ssb Neisseria gonorrhoeae MS11

41.423

97.951

0.406
  ssb Neisseria meningitidis MC58

40.586

97.951

0.398

Multiple sequence alignment