Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RTA_RS00995 Genome accession   NC_015677
Coordinates   207960..208457 (+) Length   165 a.a.
NCBI ID   WP_013899500.1    Uniprot ID   -
Organism   Ramlibacter tataouinensis TTB310     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 202960..213457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTA_RS00985 (Rta_02020) uvrA 203599..206505 (-) 2907 WP_041675862.1 excinuclease ABC subunit UvrA -
  RTA_RS00990 (Rta_02030) - 206721..207929 (+) 1209 WP_013899499.1 MFS transporter -
  RTA_RS00995 (Rta_02040) ssb 207960..208457 (+) 498 WP_013899500.1 single-stranded DNA-binding protein Machinery gene
  RTA_RS01000 (Rta_02050) - 208491..209318 (+) 828 WP_013899501.1 YihY family inner membrane protein -
  RTA_RS01005 (Rta_02060) mnmA 209320..210444 (-) 1125 WP_013899502.1 tRNA 2-thiouridine(34) synthase MnmA -
  RTA_RS01010 (Rta_02070) - 210453..210941 (-) 489 WP_013899503.1 NUDIX hydrolase -
  RTA_RS01015 (Rta_02075) - 210990..211541 (+) 552 WP_013899504.1 hypothetical protein -
  RTA_RS01020 (Rta_02080) - 211504..212226 (-) 723 WP_013899505.1 hypothetical protein -
  RTA_RS01025 (Rta_02090) - 212312..213457 (-) 1146 WP_013899506.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17560.63 Da        Isoelectric Point: 5.9668

>NTDB_id=41339 RTA_RS00995 WP_013899500.1 207960..208457(+) (ssb) [Ramlibacter tataouinensis TTB310]
MASVNKVILVGNCGRDPEIRYLPSGAAVANVTLATSSRRKDKSSGETIEETQWHRITFYDRLAEIAGEYVKKGRPIYVEG
RLKYGKYTGQDGVEKNTVDIIATELQLLGGREGMGGPSGGGDEEGGGAPQRRAPAPAARAPAPAPRPAAQKPSSGFDDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=41339 RTA_RS00995 WP_013899500.1 207960..208457(+) (ssb) [Ramlibacter tataouinensis TTB310]
ATGGCATCCGTCAACAAAGTCATCCTGGTCGGCAACTGCGGCCGCGACCCCGAGATCCGTTACCTGCCCTCCGGCGCCGC
GGTGGCCAACGTCACCCTGGCCACGTCCAGCCGGCGCAAGGACAAGAGCAGCGGCGAGACCATCGAAGAGACCCAGTGGC
ACCGCATCACCTTCTACGACCGCCTGGCCGAGATCGCCGGCGAGTACGTCAAGAAGGGCCGTCCCATCTACGTGGAAGGC
CGCCTGAAGTACGGCAAGTACACCGGCCAGGACGGCGTCGAGAAGAACACGGTGGACATCATCGCCACCGAGCTGCAGCT
GCTGGGCGGCCGCGAGGGCATGGGCGGCCCGTCCGGCGGCGGTGACGAGGAGGGCGGCGGCGCGCCGCAGCGCCGCGCCC
CGGCCCCCGCCGCGCGCGCACCGGCCCCGGCCCCGCGCCCGGCCGCGCAGAAGCCGTCGTCGGGCTTCGACGACATGGAT
GACGACATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.491
  ssb Neisseria meningitidis MC58

46.023

100

0.491
  ssb Glaesserella parasuis strain SC1401

42.781

100

0.485
  ssb Vibrio cholerae strain A1552

44.444

100

0.485

Multiple sequence alignment