Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5409_RS03765 Genome accession   NZ_CP060086
Coordinates   785647..786144 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain JNQH-PA57     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 780647..791144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5409_RS03750 (H5409_03750) bfr 780655..781119 (+) 465 WP_003093668.1 bacterioferritin -
  H5409_RS03755 (H5409_03755) uvrA 781191..784028 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  H5409_RS03760 (H5409_03760) - 784242..785630 (+) 1389 WP_009316331.1 MFS transporter -
  H5409_RS03765 (H5409_03765) ssb 785647..786144 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  H5409_RS03770 (H5409_03770) pchA 786233..787663 (-) 1431 WP_121381621.1 isochorismate synthase PchA -
  H5409_RS03775 (H5409_03775) pchB 787660..787965 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  H5409_RS03780 (H5409_03780) pchC 787965..788720 (-) 756 WP_003129315.1 pyochelin biosynthesis editing thioesterase PchC -
  H5409_RS03785 (H5409_03785) pchD 788717..790360 (-) 1644 WP_121381620.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=413285 H5409_RS03765 WP_003114685.1 785647..786144(+) (ssb) [Pseudomonas aeruginosa strain JNQH-PA57]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=413285 H5409_RS03765 WP_003114685.1 785647..786144(+) (ssb) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGATTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515