Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PJ20_RS20950 Genome accession   NZ_CP047386
Coordinates   4768632..4769150 (-) Length   172 a.a.
NCBI ID   WP_039370936.1    Uniprot ID   -
Organism   Pandoraea fibrosis strain 7641     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4763632..4774150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ20_RS20930 (PJ20_020930) - 4763776..4765155 (-) 1380 WP_039370926.1 hypothetical protein -
  PJ20_RS20935 (PJ20_020935) - 4765348..4765518 (-) 171 WP_039370930.1 rubredoxin -
  PJ20_RS20940 (PJ20_020940) thiD 4765733..4766569 (+) 837 WP_039370933.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PJ20_RS20945 (PJ20_020945) - 4766662..4768533 (-) 1872 WP_052240696.1 PglL family O-oligosaccharyltransferase -
  PJ20_RS20950 (PJ20_020950) pilA 4768632..4769150 (-) 519 WP_039370936.1 pilin Machinery gene
  PJ20_RS20955 (PJ20_020955) - 4769381..4770109 (-) 729 WP_039370938.1 TerC family protein -
  PJ20_RS20960 (PJ20_020960) sucD 4770256..4771137 (-) 882 WP_039370940.1 succinate--CoA ligase subunit alpha -
  PJ20_RS20965 (PJ20_020965) sucC 4771222..4772388 (-) 1167 WP_039370944.1 ADP-forming succinate--CoA ligase subunit beta -
  PJ20_RS20970 (PJ20_020970) - 4772385..4773071 (-) 687 WP_039370948.1 DUF2889 domain-containing protein -
  PJ20_RS20975 (PJ20_020975) recX 4773381..4773836 (-) 456 WP_039370950.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17596.21 Da        Isoelectric Point: 9.8571

>NTDB_id=413164 PJ20_RS20950 WP_039370936.1 4768632..4769150(-) (pilA) [Pandoraea fibrosis strain 7641]
MRRFGHRTTGIAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGVAASAKALVSENAMHGAPFNSGWQAP
SATDNVNSVSIDSVSGNVTVAYTQRAGDGALVLVPTSAGVDGAPKALTVGKAPEGQIVWTCYAQGREGAPNGATLPGKLA
PQECRGPLAKAA

Nucleotide


Download         Length: 519 bp        

>NTDB_id=413164 PJ20_RS20950 WP_039370936.1 4768632..4769150(-) (pilA) [Pandoraea fibrosis strain 7641]
ATGCGTCGTTTCGGCCACCGGACCACCGGTATCGCCAAATCCCGGGGTTTTACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATTGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAGAATTATCTGGTGCGCGCACGCGTTGTCGAAGGGTTGG
GCGTTGCTGCCTCGGCCAAGGCACTCGTGAGTGAGAACGCCATGCATGGCGCGCCGTTCAACAGCGGCTGGCAGGCGCCG
AGCGCGACCGATAACGTGAACTCGGTGAGCATCGACTCGGTGAGTGGCAACGTGACCGTCGCCTACACGCAACGCGCGGG
CGATGGTGCGCTCGTGCTGGTGCCGACGAGTGCCGGCGTCGATGGTGCGCCCAAGGCGCTGACGGTCGGCAAGGCACCGG
AAGGCCAGATCGTGTGGACGTGTTACGCCCAGGGCCGTGAAGGGGCGCCGAACGGGGCGACTTTGCCGGGTAAGCTGGCG
CCGCAGGAGTGTCGCGGCCCGCTGGCCAAGGCGGCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-35)

Pilin (bacterial filament) (Pilin)

(45-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

47.429

100

0.483
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.854

100

0.378
  pilA2 Legionella pneumophila str. Paris

39.873

91.86

0.366
  pilA2 Legionella pneumophila strain ERS1305867

39.241

91.86

0.36

Multiple sequence alignment