Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PI93_RS07045 | Genome accession | NZ_CP047385 |
| Coordinates | 1578131..1578649 (+) | Length | 172 a.a. |
| NCBI ID | WP_039370936.1 | Uniprot ID | - |
| Organism | Pandoraea fibrosis strain 6399 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1573131..1583649
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PI93_RS07020 (PI93_007020) | recX | 1573445..1573900 (+) | 456 | WP_039370950.1 | recombination regulator RecX | - |
| PI93_RS07025 (PI93_007025) | - | 1574210..1574896 (+) | 687 | WP_039370948.1 | DUF2889 domain-containing protein | - |
| PI93_RS07030 (PI93_007030) | sucC | 1574893..1576059 (+) | 1167 | WP_039370944.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| PI93_RS07035 (PI93_007035) | sucD | 1576144..1577025 (+) | 882 | WP_039370940.1 | succinate--CoA ligase subunit alpha | - |
| PI93_RS07040 (PI93_007040) | - | 1577172..1577900 (+) | 729 | WP_039370938.1 | TerC family protein | - |
| PI93_RS07045 (PI93_007045) | pilA | 1578131..1578649 (+) | 519 | WP_039370936.1 | pilin | Machinery gene |
| PI93_RS07050 (PI93_007050) | - | 1578748..1580619 (+) | 1872 | WP_052240696.1 | PglL family O-oligosaccharyltransferase | - |
| PI93_RS07055 (PI93_007055) | - | 1580712..1581548 (-) | 837 | WP_039370933.1 | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | - |
| PI93_RS07060 (PI93_007060) | - | 1581763..1581933 (+) | 171 | WP_039370930.1 | rubredoxin | - |
| PI93_RS07065 (PI93_007065) | - | 1582126..1583505 (+) | 1380 | WP_039370926.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 17596.21 Da Isoelectric Point: 9.8571
>NTDB_id=413145 PI93_RS07045 WP_039370936.1 1578131..1578649(+) (pilA) [Pandoraea fibrosis strain 6399]
MRRFGHRTTGIAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGVAASAKALVSENAMHGAPFNSGWQAP
SATDNVNSVSIDSVSGNVTVAYTQRAGDGALVLVPTSAGVDGAPKALTVGKAPEGQIVWTCYAQGREGAPNGATLPGKLA
PQECRGPLAKAA
MRRFGHRTTGIAKSRGFTLIELMIVLAIIGVLVTAGVPYLQNYLVRARVVEGLGVAASAKALVSENAMHGAPFNSGWQAP
SATDNVNSVSIDSVSGNVTVAYTQRAGDGALVLVPTSAGVDGAPKALTVGKAPEGQIVWTCYAQGREGAPNGATLPGKLA
PQECRGPLAKAA
Nucleotide
Download Length: 519 bp
>NTDB_id=413145 PI93_RS07045 WP_039370936.1 1578131..1578649(+) (pilA) [Pandoraea fibrosis strain 6399]
ATGCGTCGTTTCGGCCACCGGACCACCGGTATCGCCAAATCCCGGGGTTTTACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATTGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAGAATTATCTGGTGCGCGCACGCGTTGTCGAAGGGTTGG
GCGTTGCTGCCTCGGCCAAGGCACTCGTGAGTGAGAACGCCATGCATGGCGCGCCGTTCAACAGCGGCTGGCAGGCGCCG
AGCGCGACCGATAACGTGAACTCGGTGAGCATCGACTCGGTGAGTGGCAACGTGACCGTCGCCTACACGCAACGCGCGGG
CGATGGTGCGCTCGTGCTGGTGCCGACGAGTGCCGGCGTCGATGGTGCGCCCAAGGCGCTGACGGTCGGCAAGGCACCGG
AAGGCCAGATCGTGTGGACGTGTTACGCCCAGGGCCGTGAAGGGGCGCCGAACGGGGCGACTTTGCCGGGTAAGCTGGCG
CCGCAGGAGTGTCGCGGCCCGCTGGCCAAGGCGGCCTGA
ATGCGTCGTTTCGGCCACCGGACCACCGGTATCGCCAAATCCCGGGGTTTTACCCTGATCGAGCTGATGATCGTGCTGGC
GATCATTGGCGTGTTGGTCACGGCAGGGGTTCCGTATCTGCAGAATTATCTGGTGCGCGCACGCGTTGTCGAAGGGTTGG
GCGTTGCTGCCTCGGCCAAGGCACTCGTGAGTGAGAACGCCATGCATGGCGCGCCGTTCAACAGCGGCTGGCAGGCGCCG
AGCGCGACCGATAACGTGAACTCGGTGAGCATCGACTCGGTGAGTGGCAACGTGACCGTCGCCTACACGCAACGCGCGGG
CGATGGTGCGCTCGTGCTGGTGCCGACGAGTGCCGGCGTCGATGGTGCGCCCAAGGCGCTGACGGTCGGCAAGGCACCGG
AAGGCCAGATCGTGTGGACGTGTTACGCCCAGGGCCGTGAAGGGGCGCCGAACGGGGCGACTTTGCCGGGTAAGCTGGCG
CCGCAGGAGTGTCGCGGCCCGCTGGCCAAGGCGGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
47.429 |
100 |
0.483 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
33.854 |
100 |
0.378 |
| pilA2 | Legionella pneumophila str. Paris |
39.873 |
91.86 |
0.366 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.241 |
91.86 |
0.36 |