Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GSN03_RS26425 Genome accession   NZ_CP047366
Coordinates   5125110..5125631 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus nitratireducens strain BM02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5120110..5130631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSN03_RS26405 (GSN03_26205) rplI 5121302..5121748 (-) 447 WP_212088744.1 50S ribosomal protein L9 -
  GSN03_RS26410 (GSN03_26210) - 5121745..5123718 (-) 1974 WP_212088745.1 DHH family phosphoesterase -
  GSN03_RS26415 (GSN03_26215) - 5123820..5124752 (-) 933 WP_212088747.1 YybS family protein -
  GSN03_RS26420 (GSN03_26220) rpsR 5124832..5125065 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  GSN03_RS26425 (GSN03_26225) ssbA 5125110..5125631 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  GSN03_RS26430 (GSN03_26230) rpsF 5125658..5125948 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  GSN03_RS26435 (GSN03_26235) ychF 5126140..5127240 (-) 1101 WP_212088749.1 redox-regulated ATPase YchF -
  GSN03_RS26440 (GSN03_26240) - 5127356..5127553 (-) 198 WP_000436055.1 DUF951 domain-containing protein -
  GSN03_RS26445 (GSN03_26245) - 5127574..5128431 (-) 858 WP_000362301.1 mechanosensitive ion channel family protein -
  GSN03_RS26450 (GSN03_26250) yyaC 5128692..5129288 (+) 597 WP_001020734.1 spore protease YyaC -
  GSN03_RS26455 (GSN03_26255) spo0J 5129309..5130160 (-) 852 WP_001051821.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=413062 GSN03_RS26425 WP_000981963.1 5125110..5125631(-) (ssbA) [Bacillus nitratireducens strain BM02]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=413062 GSN03_RS26425 WP_000981963.1 5125110..5125631(-) (ssbA) [Bacillus nitratireducens strain BM02]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment