Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GTN30_RS12580 Genome accession   NZ_CP047363
Coordinates   2373865..2374383 (-) Length   172 a.a.
NCBI ID   WP_138072878.1    Uniprot ID   A0AAE6X3W2
Organism   Macrococcoides canis strain Epi0076A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2368865..2379383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTN30_RS12550 (GTN30_12515) - 2369911..2370414 (-) 504 Protein_2445 solute carrier family 23 protein -
  GTN30_RS12555 (GTN30_12520) - 2370416..2370649 (-) 234 Protein_2446 xanthine phosphoribosyltransferase -
  GTN30_RS12560 (GTN30_12525) - 2371154..2372134 (+) 981 WP_138072872.1 DUF2382 domain-containing protein -
  GTN30_RS12565 (GTN30_12530) - 2372238..2372852 (+) 615 WP_158290770.1 GNAT family N-acetyltransferase -
  GTN30_RS12570 (GTN30_12535) - 2372849..2373406 (-) 558 WP_138072876.1 YfbU family protein -
  GTN30_RS12575 (GTN30_12540) rpsR 2373590..2373832 (-) 243 WP_041636240.1 30S ribosomal protein S18 -
  GTN30_RS12580 (GTN30_12545) ssbA 2373865..2374383 (-) 519 WP_138072878.1 single-stranded DNA-binding protein Machinery gene
  GTN30_RS12585 (GTN30_12550) rpsF 2374408..2374698 (-) 291 WP_086043690.1 30S ribosomal protein S6 -
  GTN30_RS12590 (GTN30_12555) ychF 2375175..2376275 (-) 1101 WP_138072880.1 redox-regulated ATPase YchF -
  GTN30_RS12595 (GTN30_12560) - 2376294..2376482 (-) 189 WP_138072882.1 DUF951 domain-containing protein -
  GTN30_RS12600 (GTN30_12565) - 2376484..2377371 (-) 888 WP_138072884.1 mechanosensitive ion channel family protein -
  GTN30_RS12605 (GTN30_12570) - 2377372..2378235 (-) 864 WP_086043618.1 ParB/RepB/Spo0J family partition protein -
  GTN30_RS12610 (GTN30_12575) - 2378228..2378989 (-) 762 WP_086043619.1 ParA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19037.61 Da        Isoelectric Point: 5.1751

>NTDB_id=413010 GTN30_RS12580 WP_138072878.1 2373865..2374383(-) (ssbA) [Macrococcoides canis strain Epi0076A]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGSYGHTQGQNQNYQASNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=413010 GTN30_RS12580 WP_138072878.1 2373865..2374383(-) (ssbA) [Macrococcoides canis strain Epi0076A]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACAAATGCCCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTCAACAATTTCTTGCACAAAGGTAGCTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGTAGAGTATATGTAACAGAAGTGGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAGTCACGTTCAAATAATCCGTCTGATGACTATTCAAGCTATGACCAAGGTAGTTATGGTCATACGCAAGGTC
AGAATCAAAATTATCAAGCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.669

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

54.237

100

0.558
  ssb Vibrio cholerae strain A1552

34.225

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366

Multiple sequence alignment