Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   GTH23_RS00215 Genome accession   NZ_CP047340
Coordinates   57488..58171 (-) Length   227 a.a.
NCBI ID   WP_156734072.1    Uniprot ID   A0A6G6TED8
Organism   Proteus terrae subsp. cibarius strain ZF1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 52488..63171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTH23_RS00210 (GTH23_00210) - 54650..57316 (-) 2667 WP_202620839.1 AAA family ATPase -
  GTH23_RS00215 (GTH23_00215) ideA 57488..58171 (-) 684 WP_156734072.1 endonuclease Regulator
  GTH23_RS00220 (GTH23_00220) - 58280..58882 (-) 603 WP_156734071.1 hypothetical protein -
  GTH23_RS00225 (GTH23_00225) - 59250..59576 (+) 327 WP_156734069.1 plasmid-related protein -
  GTH23_RS00230 (GTH23_00230) ssb 59592..60011 (+) 420 WP_040132793.1 single-stranded DNA-binding protein -
  GTH23_RS00235 (GTH23_00235) bet 60091..60909 (+) 819 WP_156734067.1 phage recombination protein Bet -
  GTH23_RS00240 - 60992..61135 (+) 144 WP_164530179.1 hypothetical protein -
  GTH23_RS00245 (GTH23_00240) - 61196..62212 (+) 1017 WP_156734065.1 YqaJ viral recombinase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26453.59 Da        Isoelectric Point: 7.5402

>NTDB_id=412820 GTH23_RS00215 WP_156734072.1 57488..58171(-) (ideA) [Proteus terrae subsp. cibarius strain ZF1]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGLCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKLRDLRIRGIQGKSNCYVSGSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=412820 GTH23_RS00215 WP_156734072.1 57488..58171(-) (ideA) [Proteus terrae subsp. cibarius strain ZF1]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGCTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGTGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTGTCGGATCTCCATAACCTTGTACCATCTGTAGGAGAACTCAATGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAATGAACCAAGAGCCTATGGTCTATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGACA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAGTGGGAAAAATTACGTGATTTGAGGATTAGAG
GCATTCAAGGTAAGTCTAATTGCTATGTATCAGGCAGCTGCTAG

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(41-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6TED8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

97.797

100

0.978
  dns Vibrio parahaemolyticus RIMD 2210633

51.965

100

0.524
  dns Aliivibrio fischeri ES114

51.304

100

0.52
  dns Vibrio cholerae strain A1552

50.667

99.119

0.502
  dns Campylobacter jejuni RM1221

38.393

98.678

0.379

Multiple sequence alignment