Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GSY53_RS07715 Genome accession   NZ_CP047325
Coordinates   1496683..1497201 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain GOT9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1491683..1502201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS07685 (GSY53_07685) yyaJ 1492185..1493540 (+) 1356 WP_159357100.1 MFS transporter -
  GSY53_RS07690 (GSY53_07690) maa 1493574..1494128 (-) 555 WP_120363564.1 sugar O-acetyltransferase -
  GSY53_RS07695 (GSY53_07695) yyaH 1494146..1494526 (-) 381 WP_120363565.1 VOC family protein -
  GSY53_RS07700 (GSY53_07700) ccpB 1494582..1495517 (-) 936 WP_029318523.1 transcriptional regulator CcpB -
  GSY53_RS07705 (GSY53_07705) xth 1495576..1496334 (-) 759 WP_069703958.1 exodeoxyribonuclease III -
  GSY53_RS07710 (GSY53_07710) rpsR 1496400..1496639 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  GSY53_RS07715 (GSY53_07715) ssbA 1496683..1497201 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  GSY53_RS07720 (GSY53_07720) rpsF 1497242..1497529 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  GSY53_RS07725 (GSY53_07725) ychF 1497640..1498740 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  GSY53_RS07730 (GSY53_07730) yyaE 1498867..1500870 (-) 2004 WP_159357101.1 molybdopterin-dependent oxidoreductase -
  GSY53_RS07735 (GSY53_07735) yyzM 1500921..1501127 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=412699 GSY53_RS07715 WP_003219228.1 1496683..1497201(-) (ssbA) [Bacillus subtilis strain GOT9]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=412699 GSY53_RS07715 WP_003219228.1 1496683..1497201(-) (ssbA) [Bacillus subtilis strain GOT9]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment