Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GR140_RS02415 Genome accession   NZ_CP047311
Coordinates   543675..544220 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida strain YC-AE1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 538675..549220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR140_RS02400 (GR140_02410) bfr 538770..539234 (+) 465 WP_003255449.1 bacterioferritin -
  GR140_RS02405 (GR140_02415) uvrA 539307..542141 (-) 2835 WP_004576882.1 excinuclease ABC subunit UvrA -
  GR140_RS02410 (GR140_02420) - 542271..543665 (+) 1395 WP_003255447.1 MFS transporter -
  GR140_RS02415 (GR140_02425) ssb 543675..544220 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  GR140_RS02420 (GR140_02430) - 544350..545591 (+) 1242 WP_212628225.1 site-specific integrase -
  GR140_RS02425 (GR140_02435) - 545588..547162 (+) 1575 WP_212628226.1 site-specific integrase -
  GR140_RS02430 (GR140_02440) - 547155..549155 (+) 2001 WP_212628227.1 integrase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=412562 GR140_RS02415 WP_003255446.1 543675..544220(+) (ssb) [Pseudomonas putida strain YC-AE1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=412562 GR140_RS02415 WP_003255446.1 543675..544220(+) (ssb) [Pseudomonas putida strain YC-AE1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCATACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAGCAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492

Multiple sequence alignment