Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GTF72_RS12270 | Genome accession | NZ_CP047295 |
| Coordinates | 2707118..2707651 (-) | Length | 177 a.a. |
| NCBI ID | WP_000168289.1 | Uniprot ID | Q9KUW2 |
| Organism | Vibrio cholerae C6706 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2702118..2712651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTF72_RS12250 (GTF72_12260) | - | 2702573..2702890 (-) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
| GTF72_RS12255 (GTF72_12265) | gspM | 2702883..2703533 (-) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| GTF72_RS12260 (GTF72_12270) | - | 2703530..2704969 (-) | 1440 | WP_000743253.1 | PilN domain-containing protein | - |
| GTF72_RS12265 (GTF72_12275) | csrD | 2704982..2706994 (-) | 2013 | WP_001918202.1 | RNase E specificity factor CsrD | - |
| GTF72_RS12270 (GTF72_12280) | ssb | 2707118..2707651 (-) | 534 | WP_000168289.1 | single-stranded DNA-binding protein | Machinery gene |
| GTF72_RS12275 (GTF72_12285) | qstR | 2707943..2708587 (+) | 645 | WP_001188316.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GTF72_RS12280 (GTF72_12290) | galU | 2708760..2709632 (+) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GTF72_RS12285 (GTF72_12295) | uvrA | 2709788..2712610 (+) | 2823 | WP_000357696.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19672.90 Da Isoelectric Point: 5.7626
>NTDB_id=412296 GTF72_RS12270 WP_000168289.1 2707118..2707651(-) (ssb) [Vibrio cholerae C6706]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=412296 GTF72_RS12270 WP_000168289.1 2707118..2707651(-) (ssb) [Vibrio cholerae C6706]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| ssb | Glaesserella parasuis strain SC1401 |
50.265 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |