Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GTF72_RS01315 Genome accession   NZ_CP047295
Coordinates   278971..279489 (+) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae C6706     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273971..284489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTF72_RS01295 (GTF72_01295) - 274188..276665 (-) 2478 WP_000668733.1 penicillin-binding protein 1A -
  GTF72_RS01300 (GTF72_01300) pilM 276808..277824 (+) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  GTF72_RS01305 (GTF72_01305) pilN 277814..278398 (+) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  GTF72_RS01310 (GTF72_01310) pilO 278391..278981 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  GTF72_RS01315 (GTF72_01315) pilP 278971..279489 (+) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  GTF72_RS01320 (GTF72_01320) pilQ 279515..281230 (+) 1716 WP_000788426.1 type IV pilus secretin PilQ family protein Machinery gene
  GTF72_RS01325 (GTF72_01325) aroK 281417..281941 (+) 525 WP_000818616.1 shikimate kinase AroK -
  GTF72_RS01330 (GTF72_01330) aroB 281969..283054 (+) 1086 WP_000439805.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=412267 GTF72_RS01315 WP_000792032.1 278971..279489(+) (pilP) [Vibrio cholerae C6706]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=412267 GTF72_RS01315 WP_000792032.1 278971..279489(+) (pilP) [Vibrio cholerae C6706]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564

Multiple sequence alignment