Detailed information NTG0412132

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: H4995_RS04195
• Genome accession: NZ_CP059972
• Coordinates: 790728..791735 (+)
• Length: 335 a.a.
• NCBI ID: WP_002859650.1
• Uniprot ID: Q5HT48
• Organism: Campylobacter jejuni strain C220
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 785728..796735

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H4995_RS04165 (H4995_04165)	rfaE1	785780..787165 (+)	1386	WP_002859253.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
H4995_RS04170 (H4995_04170)	gmhA	787162..787722 (+)	561	WP_002859252.1	D-sedoheptulose 7-phosphate isomerase	-
H4995_RS04175 (H4995_04175)	waaF	787703..788662 (-)	960	WP_057044069.1	glycosyltransferase family 9 protein	Regulator
H4995_RS04180 (H4995_04180)	waaV	788721..789533 (+)	813	WP_002935342.1	glycosyltransferase family 2 protein	-
H4995_RS04190 (H4995_04190)	-	790227..790637 (-)	411	WP_002783915.1	hypothetical protein	-
H4995_RS04195 (H4995_04195)	ruvB	790728..791735 (+)	1008	WP_002859650.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
H4995_RS04200 (H4995_04200)	amaA	791739..792782 (+)	1044	WP_002859651.1	AI-2E family transporter	-
H4995_RS04205 (H4995_04205)	fumC	792812..794203 (-)	1392	WP_002859652.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37295.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=412132 H4995_RS04195 WP_002859650.1 790728..791735(+) (ruvB) [Campylobacter jejuni strain C220]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=412132 H4995_RS04195 WP_002859650.1 790728..791735(+) (ruvB) [Campylobacter jejuni strain C220]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

3D structure

• AlphaFold DB: Q5HT48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.461	99.701	0.693
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.761	97.313	0.513
ruvB	Streptococcus pneumoniae TIGR4	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae R6	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae D39	48.632	98.209	0.478
ruvB	Synechocystis sp. PCC 6803	49.533	95.821	0.475