Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F3085_RS23075 | Genome accession | NZ_CP047273 |
| Coordinates | 4769504..4770028 (-) | Length | 174 a.a. |
| NCBI ID | WP_003826621.1 | Uniprot ID | A0A5B0T4S2 |
| Organism | Citrobacter freundii strain N18-04078 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4764504..4775028
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3085_RS23055 (F3085_23060) | soxR | 4766145..4766603 (-) | 459 | WP_003031733.1 | redox-sensitive transcriptional activator SoxR | - |
| F3085_RS23060 (F3085_23065) | soxS | 4766690..4767013 (+) | 324 | WP_003031731.1 | superoxide response transcriptional regulator SoxS | - |
| F3085_RS23065 (F3085_23070) | - | 4767016..4768602 (-) | 1587 | WP_003841054.1 | EAL domain-containing protein | - |
| F3085_RS23070 (F3085_23075) | - | 4769156..4769437 (+) | 282 | WP_003031727.1 | YjcB family protein | - |
| F3085_RS23075 (F3085_23080) | ssb | 4769504..4770028 (-) | 525 | WP_003826621.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| F3085_RS23080 (F3085_23085) | uvrA | 4770280..4773102 (+) | 2823 | WP_003031720.1 | excinuclease ABC subunit UvrA | - |
| F3085_RS23085 (F3085_23090) | - | 4773218..4773574 (-) | 357 | WP_003031719.1 | MmcQ/YjbR family DNA-binding protein | - |
| F3085_RS23090 (F3085_23095) | aphA | 4773702..4774415 (-) | 714 | WP_044702294.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18621.66 Da Isoelectric Point: 5.2456
>NTDB_id=412108 F3085_RS23075 WP_003826621.1 4769504..4770028(-) (ssb) [Citrobacter freundii strain N18-04078]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=412108 F3085_RS23075 WP_003826621.1 4769504..4770028(-) (ssb) [Citrobacter freundii strain N18-04078]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGTGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGTGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.889 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.598 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.5 |