Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GKS41_RS19350 Genome accession   NZ_CP047268
Coordinates   3890312..3891001 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DH8043     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3885312..3896001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS19315 - 3885510..3885992 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GKS41_RS19320 flgM 3886007..3886273 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKS41_RS19325 - 3886343..3886762 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  GKS41_RS19330 comFC 3886836..3887525 (-) 690 WP_201448519.1 phosphoribosyltransferase family protein Machinery gene
  GKS41_RS19335 - 3887531..3887815 (-) 285 WP_159354645.1 late competence development ComFB family protein -
  GKS41_RS19340 comFA 3887873..3889258 (-) 1386 WP_159354646.1 DEAD/DEAH box helicase Machinery gene
  GKS41_RS19345 - 3889366..3890214 (-) 849 WP_003151387.1 DegV family protein -
  GKS41_RS19350 degU 3890312..3891001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GKS41_RS19355 degS 3891078..3892241 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GKS41_RS19360 - 3892464..3893111 (+) 648 WP_007614107.1 YigZ family protein -
  GKS41_RS19365 - 3893116..3894147 (+) 1032 Protein_3808 LCP family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=412043 GKS41_RS19350 WP_003219701.1 3890312..3891001(-) (degU) [Bacillus velezensis strain DH8043]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=412043 GKS41_RS19350 WP_003219701.1 3890312..3891001(-) (degU) [Bacillus velezensis strain DH8043]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment