Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GKS41_RS19330 Genome accession   NZ_CP047268
Coordinates   3886836..3887525 (-) Length   229 a.a.
NCBI ID   WP_201448519.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3881836..3892525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS19295 fliW 3881927..3882358 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  GKS41_RS19300 - 3882388..3882957 (-) 570 WP_017418818.1 DUF6470 family protein -
  GKS41_RS19305 flgL 3883048..3883965 (-) 918 WP_159354643.1 flagellar hook-associated protein FlgL -
  GKS41_RS19310 flgK 3883977..3885494 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  GKS41_RS19315 - 3885510..3885992 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GKS41_RS19320 flgM 3886007..3886273 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKS41_RS19325 - 3886343..3886762 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  GKS41_RS19330 comFC 3886836..3887525 (-) 690 WP_201448519.1 phosphoribosyltransferase family protein Machinery gene
  GKS41_RS19335 - 3887531..3887815 (-) 285 WP_159354645.1 late competence development ComFB family protein -
  GKS41_RS19340 comFA 3887873..3889258 (-) 1386 WP_159354646.1 DEAD/DEAH box helicase Machinery gene
  GKS41_RS19345 - 3889366..3890214 (-) 849 WP_003151387.1 DegV family protein -
  GKS41_RS19350 degU 3890312..3891001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GKS41_RS19355 degS 3891078..3892241 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25355.10 Da        Isoelectric Point: 8.6779

>NTDB_id=412041 GKS41_RS19330 WP_201448519.1 3886836..3887525(-) (comFC) [Bacillus velezensis strain DH8043]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSRQFEKIEGPVCSICGRPRESKEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=412041 GKS41_RS19330 WP_201448519.1 3886836..3887525(-) (comFC) [Bacillus velezensis strain DH8043]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCCGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
AAGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment