Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GKS41_RS19340 Genome accession   NZ_CP047268
Coordinates   3887873..3889258 (-) Length   461 a.a.
NCBI ID   WP_159354646.1    Uniprot ID   -
Organism   Bacillus velezensis strain DH8043     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3882873..3894258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKS41_RS19305 flgL 3883048..3883965 (-) 918 WP_159354643.1 flagellar hook-associated protein FlgL -
  GKS41_RS19310 flgK 3883977..3885494 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  GKS41_RS19315 - 3885510..3885992 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GKS41_RS19320 flgM 3886007..3886273 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKS41_RS19325 - 3886343..3886762 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  GKS41_RS19330 comFC 3886836..3887525 (-) 690 WP_201448519.1 phosphoribosyltransferase family protein Machinery gene
  GKS41_RS19335 - 3887531..3887815 (-) 285 WP_159354645.1 late competence development ComFB family protein -
  GKS41_RS19340 comFA 3887873..3889258 (-) 1386 WP_159354646.1 DEAD/DEAH box helicase Machinery gene
  GKS41_RS19345 - 3889366..3890214 (-) 849 WP_003151387.1 DegV family protein -
  GKS41_RS19350 degU 3890312..3891001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GKS41_RS19355 degS 3891078..3892241 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GKS41_RS19360 - 3892464..3893111 (+) 648 WP_007614107.1 YigZ family protein -
  GKS41_RS19365 - 3893116..3894147 (+) 1032 Protein_3808 LCP family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52360.71 Da        Isoelectric Point: 9.9909

>NTDB_id=412042 GKS41_RS19340 WP_159354646.1 3887873..3889258(-) (comFA) [Bacillus velezensis strain DH8043]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRISPFIEKEYITAEPSVIRRKKRYVCRRCGQSDQSCFAAFWAPSAKRHIT
YCRACVVMGRADELTSLYSWNQISESSWEPVKLAWEGTLTDGQKQAAGALIKAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFENVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKSNSALVYVTATPSDALKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPHSLTDWV
RQKLQSRLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKEAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=412042 GKS41_RS19340 WP_159354646.1 3887873..3889258(-) (comFA) [Bacillus velezensis strain DH8043]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCAGGCATTTGTTGAGATCTGAGATACCGTT
TTCAGATCAGCGTATCAGTCCTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCTGTCATCCGCAGGAAAAAACGTT
ACGTCTGCCGCCGATGCGGCCAGTCTGACCAATCCTGCTTTGCCGCATTCTGGGCGCCTTCTGCCAAAAGACATATTACC
TATTGCCGTGCCTGTGTCGTCATGGGAAGGGCTGATGAACTGACGTCATTATATTCTTGGAATCAAATCTCAGAAAGCAG
CTGGGAGCCTGTAAAGCTTGCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGGCGCCCTTATAAAAGCGA
TAAAAGAGAAACAAGAGCTGTTAGTGTGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCACTGAATCACGGATTGCGGGTCTGTGTCGCGACTCCGCGTACAGATGTCGTGCTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAATGTTGAAGTTTCTGCTCTGTACGGCGGCAGTGAAGACAAAGGCAGTTTAACTCCGCTAATGATTTCAA
CCGCTCATCAGCTGATGCGCTATCGGGACATTTTTGATGTCATGATAATAGACGAAGTGGATGCATTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAGCAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CGCATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGAAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCACTCACTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTGAGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCGGAAGCACCTATCTTTACTGAGAGCGCACTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAGAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.904

90.239

0.36

Multiple sequence alignment