Detailed information NTG0411946

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: N026_RS03420
• Genome accession: NZ_CP047267
• Coordinates: 747307..748644 (-)
• Length: 445 a.a.
• NCBI ID: WP_024642308.1
• Uniprot ID: A0AAJ4AUN4
• Organism: Pseudomonas syringae UB303
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 742307..753644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N026_RS03405 (N026_03405)	-	742440..745637 (+)	3198	WP_024641656.1	pilus assembly protein	-
N026_RS03410 (N026_03410)	-	745649..746050 (+)	402	WP_011266587.1	type IV pilin protein	-
N026_RS03415 (N026_03415)	thiO	746077..747180 (+)	1104	WP_024641655.1	glycine oxidase ThiO	-
N026_RS03420 (N026_03420)	pilR	747307..748644 (-)	1338	WP_024642308.1	sigma-54-dependent transcriptional regulator	Regulator
N026_RS03425 (N026_03425)	pilS	748647..750239 (-)	1593	WP_024642307.1	sensor histidine kinase	Regulator
N026_RS03430 (N026_03430)	-	750229..750468 (-)	240	WP_032624946.1	PP0621 family protein	-
N026_RS03435 (N026_03435)	-	750589..751611 (-)	1023	WP_024659982.1	outer membrane protein assembly factor BamD	-
N026_RS03440 (N026_03440)	rluD	751761..752723 (+)	963	WP_011266591.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
N026_RS03445 (N026_03445)	pgeF	752720..753448 (+)	729	WP_024659983.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49734.72 Da
• Isoelectric Point: 6.3796

>NTDB_id=411946 N026_RS03420 WP_024642308.1 747307..748644(-) (pilR) [Pseudomonas syringae UB303]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRSQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=411946 N026_RS03420 WP_024642308.1 747307..748644(-) (pilR) [Pseudomonas syringae UB303]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGTAGTGCGCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCGGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATCCACGCGCTGAAGGCCGGAGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTGGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCGCAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAGTCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGTGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GCGCCCACGAAGACAAGCCAGGTCTGTTTCAGGCGGCGCATACCGGGACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAAATCGT
CGACGTGCGCATTCTGTGCGCCACCCATAAGAATCTGAATGCGGAGGTCGCGGCGGGTCGGTTCCGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCCCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGATGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGGCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.652	99.551	0.773
pilR	Acinetobacter baumannii strain A118	49.036	100	0.515
luxO	Vibrio cholerae strain A1552	37.838	99.775	0.378