Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N026_RS03425 Genome accession   NZ_CP047267
Coordinates   748647..750239 (-) Length   530 a.a.
NCBI ID   WP_024642307.1    Uniprot ID   A0AAJ4AXT4
Organism   Pseudomonas syringae UB303     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 743647..755239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N026_RS03410 (N026_03410) - 745649..746050 (+) 402 WP_011266587.1 type IV pilin protein -
  N026_RS03415 (N026_03415) thiO 746077..747180 (+) 1104 WP_024641655.1 glycine oxidase ThiO -
  N026_RS03420 (N026_03420) pilR 747307..748644 (-) 1338 WP_024642308.1 sigma-54-dependent transcriptional regulator Regulator
  N026_RS03425 (N026_03425) pilS 748647..750239 (-) 1593 WP_024642307.1 sensor histidine kinase Regulator
  N026_RS03430 (N026_03430) - 750229..750468 (-) 240 WP_032624946.1 PP0621 family protein -
  N026_RS03435 (N026_03435) - 750589..751611 (-) 1023 WP_024659982.1 outer membrane protein assembly factor BamD -
  N026_RS03440 (N026_03440) rluD 751761..752723 (+) 963 WP_011266591.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N026_RS03445 (N026_03445) pgeF 752720..753448 (+) 729 WP_024659983.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 57963.89 Da        Isoelectric Point: 6.9639

>NTDB_id=411947 N026_RS03425 WP_024642307.1 748647..750239(-) (pilS) [Pseudomonas syringae UB303]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQGALNLLGQEQLVGQIID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QKIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNDQKSDLPTLEVLDDGPGVSEQHLSKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=411947 N026_RS03425 WP_024642307.1 748647..750239(-) (pilS) [Pseudomonas syringae UB303]
GTGACCGCTGACTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTACGGCTGTACCACCTCTACCGACTGACCAT
CGGCGTTGTACTGGTTCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCACTGTTCTACGCAGCCGGCGGGCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCACTGACAGCGCGCATGCAGGTCAGCGAGGTGCTGGCCGAACAGCG
CGCGGCGGATGTCGACAGCCTTGAAGCACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGGGGGCCTTGAACCTGCTGGGCCAGGAACAACTGGTCGGCCAGATCATCGAC
ACCTGCTCGCCACAACTGGTCGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTCGGGCTGGTGCTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGGCGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CTTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGATAGGGTCATCGAAAATGTCCTGCAGTTGTCACGCAGACGCG
AAGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGAAGATTCATGTCGACATCAGCCCTGGCACGCTGACAACCCGCATGGATTCCGGACAACTGACGCAAATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTACACAATGACCAGA
AGAGCGACCTGCCCACACTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAAATGTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGTGAAAGCAATCAGGCGCATTT
GGAATACGCGCCCCGCCCCACGGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611

Multiple sequence alignment