Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H4992_RS01245 Genome accession   NZ_CP059967
Coordinates   217574..218440 (-) Length   288 a.a.
NCBI ID   WP_002856218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 212574..223440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4992_RS01225 (H4992_01225) metF 214427..215275 (+) 849 WP_182577160.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  H4992_RS01230 (H4992_01230) - 215297..215488 (-) 192 WP_002852856.1 membrane protein -
  H4992_RS01235 (H4992_01235) atpB 215485..216165 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  H4992_RS01240 (H4992_01240) radA/sms 216234..217574 (-) 1341 WP_002868570.1 DNA repair protein RadA Machinery gene
  H4992_RS01245 (H4992_01245) pilA 217574..218440 (-) 867 WP_002856218.1 signal recognition particle-docking protein FtsY Machinery gene
  H4992_RS01250 (H4992_01250) - 218440..218997 (-) 558 WP_002867374.1 TlpA disulfide reductase family protein -
  H4992_RS01255 (H4992_01255) - 219080..219430 (+) 351 Protein_247 5-formyltetrahydrofolate cyclo-ligase -
  H4992_RS01260 (H4992_01260) - 219430..219951 (+) 522 Protein_248 AraC family transcriptional regulator -
  H4992_RS01265 (H4992_01265) - 220014..220865 (+) 852 WP_002852987.1 ATP-binding protein -
  H4992_RS01270 (H4992_01270) - 220873..222036 (+) 1164 Protein_250 CynX/NimT family MFS transporter -
  H4992_RS01275 (H4992_01275) murG 222007..223035 (-) 1029 WP_002856115.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32049.03 Da        Isoelectric Point: 5.5179

>NTDB_id=411889 H4992_RS01245 WP_002856218.1 217574..218440(-) (pilA) [Campylobacter jejuni strain C201]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=411889 H4992_RS01245 WP_002856218.1 217574..218440(-) (pilA) [Campylobacter jejuni strain C201]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTAGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAATGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437

Multiple sequence alignment