Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   GSF13_RS17990 Genome accession   NZ_CP047240
Coordinates   2936787..2937095 (-) Length   102 a.a.
NCBI ID   WP_174170006.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. M8     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2931787..2942095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF13_RS25005 - 2932095..2932232 (-) 138 WP_349237909.1 GNAT family N-acetyltransferase -
  GSF13_RS17970 (GSF13_18015) - 2932308..2934065 (-) 1758 WP_211866587.1 winged helix-turn-helix domain-containing protein -
  GSF13_RS17975 (GSF13_18020) - 2934210..2935709 (+) 1500 WP_211866589.1 amidohydrolase family protein -
  GSF13_RS17980 (GSF13_18025) dsbB 2935908..2936417 (+) 510 WP_211866591.1 disulfide bond formation protein DsbB -
  GSF13_RS17985 (GSF13_18030) - 2936430..2936735 (+) 306 WP_017216140.1 hypothetical protein -
  GSF13_RS17990 (GSF13_18035) comE1/comEA 2936787..2937095 (-) 309 WP_174170006.1 helix-hairpin-helix domain-containing protein Machinery gene
  GSF13_RS17995 (GSF13_18040) - 2937366..2937680 (+) 315 WP_010606713.1 YebG family protein -
  GSF13_RS18000 (GSF13_18045) - 2937775..2938965 (-) 1191 WP_211866593.1 amino acid aminotransferase -
  GSF13_RS18005 (GSF13_18050) - 2939145..2939810 (-) 666 WP_174170004.1 GAF domain-containing protein -
  GSF13_RS18010 (GSF13_18055) - 2939938..2941596 (-) 1659 WP_010606710.1 fused response regulator/phosphatase -
  GSF13_RS18015 (GSF13_18060) - 2941618..2941923 (-) 306 WP_010371095.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10842.78 Da        Isoelectric Point: 10.5913

>NTDB_id=411775 GSF13_RS17990 WP_174170006.1 2936787..2937095(-) (comE1/comEA) [Pseudoalteromonas sp. M8]
MFNKPTILSILLALGLSCSSVLAKPTDQAKSVSQTQQQSAVLDINSADASALSSLPGIGIRKAEAIVEYRKKMGRFKTTT
ELLEVKGIGKGILAKLEGKIRV

Nucleotide


Download         Length: 309 bp        

>NTDB_id=411775 GSF13_RS17990 WP_174170006.1 2936787..2937095(-) (comE1/comEA) [Pseudoalteromonas sp. M8]
ATGTTCAATAAACCCACCATACTTTCTATTTTATTGGCGCTAGGTTTAAGCTGTTCAAGTGTGCTCGCAAAACCTACGGA
TCAAGCAAAATCTGTCTCTCAAACACAGCAGCAAAGTGCTGTACTCGATATTAATTCCGCTGACGCTTCGGCGCTTTCAA
GTTTACCAGGGATTGGTATTCGTAAAGCTGAAGCCATCGTAGAGTACCGCAAGAAAATGGGGCGCTTTAAAACAACAACG
GAGTTGCTGGAAGTAAAAGGAATTGGGAAAGGAATATTGGCAAAACTGGAGGGGAAAATTAGAGTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

44.954

100

0.48
  comEA Acinetobacter baumannii D1279779

33.058

100

0.392
  comEA Acinetobacter baumannii strain A118

28.906

100

0.363

Multiple sequence alignment