Detailed information NTG0411768

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GSF13_RS10040
• Genome accession: NZ_CP047240
• Coordinates: 1160622..1161500 (-)
• Length: 292 a.a.
• NCBI ID: WP_211868083.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. M8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1155622..1166500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF13_RS10015 (GSF13_10035)	-	1155890..1156528 (+)	639	WP_211868079.1	alpha/beta family hydrolase	-
GSF13_RS10020 (GSF13_10040)	-	1156521..1156889 (+)	369	WP_017217933.1	DUF423 domain-containing protein	-
GSF13_RS10025 (GSF13_10045)	rlmM	1156903..1157988 (+)	1086	WP_010607344.1	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	-
GSF13_RS10030 (GSF13_10050)	pilB	1158197..1159873 (-)	1677	WP_010607343.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GSF13_RS10035 (GSF13_10055)	coaE	1159983..1160612 (-)	630	WP_211868081.1	dephospho-CoA kinase	-
GSF13_RS10040 (GSF13_10060)	pilD	1160622..1161500 (-)	879	WP_211868083.1	A24 family peptidase	Machinery gene
GSF13_RS10045 (GSF13_10065)	pilC	1161635..1162864 (-)	1230	WP_211868085.1	type II secretion system F family protein	Machinery gene
GSF13_RS10050 (GSF13_10070)	-	1162926..1163384 (-)	459	WP_130126778.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GSF13_RS10055 (GSF13_10075)	nadC	1164042..1164884 (-)	843	WP_211868994.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GSF13_RS10060 (GSF13_10080)	ampD	1165428..1165970 (+)	543	WP_010607337.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32484.76 Da
• Isoelectric Point: 5.6600

>NTDB_id=411768 GSF13_RS10040 WP_211868083.1 1160622..1161500(-) (pilD) [Pseudoalteromonas sp. M8]
MQDIINLMQTQLWYWLLTVGLVSLCIGSFLNVVILRLPKMMKQGWQSECRVLLADELPTQTTEAPVFNLVKPNSHCPSCK
TPIKAWQNIPLISWLLLKGKCNHCDASISVRYPLVELTTALLSTWVAWHFGATLEATLYILITWVLVALTVIDIDEMLLP
DQLTLPTLWLVLVASCFGVGIEPNDAIIGAAIGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAIFGALMGWQAILTIVLLS
SLVGAIIGSIQLSVQGRDKATPIPFGPYLAIAGWITLMYGEQLQLWYVNLIM

Nucleotide

• Length: 879 bp

>NTDB_id=411768 GSF13_RS10040 WP_211868083.1 1160622..1161500(-) (pilD) [Pseudoalteromonas sp. M8]
ATGCAAGATATTATCAACTTGATGCAAACCCAGTTATGGTATTGGTTACTCACCGTCGGACTCGTCAGCCTTTGCATCGG
TAGCTTTCTCAATGTGGTTATTCTTCGCTTACCTAAAATGATGAAGCAGGGCTGGCAATCAGAATGTCGCGTGTTGCTTG
CCGATGAGCTACCAACACAAACCACTGAAGCACCCGTATTTAATTTAGTAAAACCAAATTCTCATTGCCCGAGCTGCAAA
ACGCCGATTAAAGCGTGGCAAAACATTCCACTGATCAGCTGGCTATTATTAAAAGGCAAATGCAACCACTGCGACGCGTC
AATCTCTGTCCGCTATCCTTTGGTAGAGCTAACAACCGCCCTACTCTCCACATGGGTTGCGTGGCATTTTGGTGCCACTT
TAGAAGCCACTCTGTACATTTTGATTACTTGGGTATTAGTCGCACTTACGGTTATCGATATCGACGAAATGTTGCTGCCT
GATCAGTTAACGCTACCAACCTTATGGTTAGTACTAGTTGCCAGTTGTTTTGGTGTTGGCATCGAACCCAATGATGCCAT
CATTGGTGCGGCGATAGGTTATTTGAGTTTATGGAGTGTGTATTGGCTCTTTAAATTACTCACAGGTAAAGAAGGCATGG
GCTATGGCGACTTTAAACTGCTAGCCATCTTTGGTGCATTGATGGGCTGGCAAGCAATCTTAACCATAGTACTACTTTCA
AGCCTAGTCGGCGCAATTATTGGTAGTATCCAGTTAAGTGTTCAAGGCCGAGATAAAGCCACCCCAATCCCATTTGGCCC
TTACTTAGCCATCGCAGGCTGGATCACCCTAATGTACGGCGAGCAGCTACAGCTGTGGTACGTAAACTTAATAATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.633	98.973	0.531
pilD	Acinetobacter nosocomialis M2	53.633	98.973	0.531
pilD	Vibrio cholerae strain A1552	52.5	95.89	0.503
pilD	Vibrio campbellii strain DS40M4	50.515	99.658	0.503
pilD	Neisseria gonorrhoeae MS11	43.939	90.411	0.397