Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GSF13_RS06895 Genome accession   NZ_CP047240
Coordinates   397444..398097 (+) Length   217 a.a.
NCBI ID   WP_010605948.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. M8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 392444..403097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF13_RS06885 (GSF13_06895) - 395173..395919 (+) 747 WP_010605950.1 transporter substrate-binding domain-containing protein -
  GSF13_RS06890 (GSF13_06900) - 396059..397426 (+) 1368 WP_211868967.1 MFS transporter -
  GSF13_RS06895 (GSF13_06905) ssb 397444..398097 (+) 654 WP_010605948.1 single-stranded DNA-binding protein Machinery gene
  GSF13_RS24650 - 398353..399063 (+) 711 WP_249122744.1 hypothetical protein -
  GSF13_RS24655 - 399060..399938 (+) 879 WP_249122745.1 EAL domain-containing protein -
  GSF13_RS06905 (GSF13_06915) - 399960..400871 (-) 912 WP_211867588.1 pyridoxal-phosphate dependent enzyme -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23810.75 Da        Isoelectric Point: 4.7483

>NTDB_id=411760 GSF13_RS06895 WP_010605948.1 397444..398097(+) (ssb) [Pseudoalteromonas sp. M8]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANISIATTDSWKDKNTGQLQERTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GRLQTRKWTDQSGQEKYTTEIVVDMGGQMQMLGGRGEQQGQGGGQYQGAQQQQNNYGQQSYNQAPQQQYSQPQQSQSNQQ
QGGFAPQQSQQNSQQSSGFGGQSQGGFAPQQNQNNGQSGGSSNPMEPPIDFDDDIPF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=411760 GSF13_RS06895 WP_010605948.1 397444..398097(+) (ssb) [Pseudoalteromonas sp. M8]
ATGGCACGTGGTGTTAATAAAGTAATTTTGGTAGGTAATCTGGGCCAAGATCCTGAAGTTCGCTATATGCCAAACGGTAA
CGGCGTGGCTAACATCAGCATTGCAACTACGGATAGCTGGAAAGATAAAAACACCGGTCAATTGCAAGAGCGTACAGAAT
GGCACCGTGTGGTGTTGTTTGGCAAACTTGCGGAAGTTGCGGGTGAGTATTTAAGAAAAGGCTCGCAGGTGTACATTGAA
GGTCGTCTACAGACTCGTAAGTGGACAGATCAAAGCGGCCAAGAAAAGTACACAACGGAAATCGTGGTGGACATGGGTGG
CCAAATGCAAATGCTAGGTGGCCGTGGCGAGCAGCAGGGTCAAGGTGGCGGCCAGTACCAAGGTGCTCAACAGCAGCAAA
ATAATTATGGCCAGCAAAGCTATAATCAAGCGCCTCAGCAGCAATATTCGCAGCCACAGCAAAGCCAGTCAAACCAACAG
CAAGGTGGATTCGCACCACAGCAATCGCAACAGAATTCTCAGCAGTCTTCTGGATTCGGTGGCCAGTCTCAAGGTGGCTT
TGCACCACAACAGAACCAAAACAATGGTCAATCAGGTGGTAGCTCAAACCCTATGGAGCCACCAATTGACTTTGATGATG
ATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.378

100

0.544
  ssb Glaesserella parasuis strain SC1401

46.977

99.078

0.465
  ssb Neisseria meningitidis MC58

41.86

99.078

0.415
  ssb Neisseria gonorrhoeae MS11

41.589

98.618

0.41

Multiple sequence alignment