Detailed information NTG0411738

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GSF04_RS09185
• Genome accession: NZ_CP047238
• Coordinates: 952457..953335 (-)
• Length: 292 a.a.
• NCBI ID: WP_211859333.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. A22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 947457..958335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF04_RS09165 (GSF04_09205)	-	947607..947975 (+)	369	WP_095728687.1	DUF423 domain-containing protein	-
GSF04_RS09170 (GSF04_09210)	rlmM	947989..949074 (+)	1086	WP_088531405.1	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	-
GSF04_RS09175 (GSF04_09215)	pilB	950046..951722 (-)	1677	WP_130164712.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GSF04_RS09180 (GSF04_09220)	coaE	951818..952447 (-)	630	WP_211859332.1	dephospho-CoA kinase	-
GSF04_RS09185 (GSF04_09225)	pilD	952457..953335 (-)	879	WP_211859333.1	A24 family peptidase	Machinery gene
GSF04_RS09190 (GSF04_09230)	pilC	953459..954694 (-)	1236	WP_211859334.1	type II secretion system F family protein	Machinery gene
GSF04_RS09195 (GSF04_09235)	-	954749..955186 (-)	438	WP_211859335.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GSF04_RS23515 (GSF04_09240)	-	955658..955867 (-)	210	WP_349251739.1	hypothetical protein	-
GSF04_RS09200 (GSF04_09245)	nadC	956120..956962 (-)	843	WP_211859922.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GSF04_RS09205 (GSF04_09250)	ampD	957744..958286 (+)	543	WP_211859336.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32527.79 Da
• Isoelectric Point: 5.6600

>NTDB_id=411738 GSF04_RS09185 WP_211859333.1 952457..953335(-) (pilD) [Pseudoalteromonas sp. A22]
MQDIINLMQTQLWYWLLTVGLVSLCTGSFLNVVILRLPKMMKQNWQSECRVLLADELPTQTAEAPVFNLIKPNSHCPSCK
TPIKAWQNIPLISWLLLKGKCNHCDASISVRYPLVELTTALLSTWIAWHFGATLEATLYVLITWVLIALTVIDIDEMLLP
DQLTLPTLWLVLVASCFGVGIEPNDAIIGAAIGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAIFGALMGWQAILTIVLLS
SLVGAIIGSIQLSVQGRDKATPIPFGPYLAIAGWITLMYGEQLQLWYVNLIM

Nucleotide

• Length: 879 bp

>NTDB_id=411738 GSF04_RS09185 WP_211859333.1 952457..953335(-) (pilD) [Pseudoalteromonas sp. A22]
ATGCAAGATATTATCAACTTGATGCAAACCCAGTTATGGTATTGGTTACTCACCGTCGGACTCGTTAGTCTTTGCACCGG
TAGCTTTCTCAATGTGGTTATTCTTCGCTTACCTAAAATGATGAAACAGAACTGGCAATCAGAATGTCGCGTGTTGCTTG
CCGATGAGCTACCAACACAAACCGCTGAAGCACCCGTGTTTAATTTAATTAAACCAAATTCTCATTGCCCCAGCTGCAAA
ACGCCGATTAAGGCGTGGCAAAACATTCCACTGATCAGCTGGCTATTATTAAAAGGCAAATGCAACCACTGCGACGCGTC
AATCTCTGTACGCTATCCTTTGGTAGAGCTAACAACCGCCCTACTCTCCACATGGATTGCTTGGCATTTTGGTGCCACTT
TAGAAGCCACTCTATATGTTTTGATTACTTGGGTATTAATCGCACTTACGGTTATCGATATCGACGAAATGTTGCTGCCA
GATCAGTTAACGCTACCAACTTTATGGTTAGTACTGGTTGCCAGTTGTTTTGGTGTTGGCATTGAGCCCAATGATGCCAT
TATCGGCGCGGCCATAGGTTATTTGAGTTTATGGAGTGTGTATTGGCTGTTTAAATTACTCACAGGTAAAGAAGGCATGG
GCTATGGCGACTTTAAACTGCTAGCCATCTTTGGTGCATTGATGGGCTGGCAAGCAATTCTAACTATAGTGCTACTTTCA
AGCCTAGTCGGCGCAATCATTGGTAGCATCCAATTAAGTGTTCAAGGCCGAGATAAAGCCACCCCAATCCCATTTGGCCC
TTACTTAGCCATTGCAGGCTGGATCACCCTAATGTACGGCGAGCAGCTACAGCTGTGGTACGTAAACTTAATCATGTAA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-130)

• Type IV leader peptidase family (Peptidase_A24) (141-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.287	98.973	0.527
pilD	Acinetobacter nosocomialis M2	53.287	98.973	0.527
pilD	Vibrio campbellii strain DS40M4	51.546	99.658	0.514
pilD	Vibrio cholerae strain A1552	53.214	95.89	0.51
pilD	Neisseria gonorrhoeae MS11	43.561	90.411	0.394