Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GRT08_RS19510 Genome accession   NZ_CP047234
Coordinates   3940619..3941137 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3935619..3946137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS19480 (GRT08_19220) - 3936821..3937201 (-) 381 WP_071392547.1 VOC family protein -
  GRT08_RS19485 (GRT08_19225) - 3937257..3938195 (-) 939 WP_070082670.1 LacI family DNA-binding transcriptional regulator -
  GRT08_RS19490 (GRT08_19230) - 3938258..3939016 (-) 759 WP_377802936.1 exodeoxyribonuclease III -
  GRT08_RS19495 (GRT08_19235) - 3939043..3939570 (-) 528 WP_071392549.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  GRT08_RS19500 (GRT08_19240) - 3939567..3940148 (-) 582 WP_071392550.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  GRT08_RS19505 (GRT08_19245) rpsR 3940336..3940575 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  GRT08_RS19510 (GRT08_19250) ssbA 3940619..3941137 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  GRT08_RS19515 (GRT08_19255) rpsF 3941177..3941464 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  GRT08_RS19520 (GRT08_19260) ychF 3941576..3942676 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  GRT08_RS19525 (GRT08_19265) - 3942803..3944806 (-) 2004 WP_377802938.1 molybdopterin-dependent oxidoreductase -
  GRT08_RS19530 (GRT08_19270) - 3944853..3945059 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=411722 GRT08_RS19510 WP_004392979.1 3940619..3941137(-) (ssbA) [Bacillus amyloliquefaciens strain FJ4]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=411722 GRT08_RS19510 WP_004392979.1 3940619..3941137(-) (ssbA) [Bacillus amyloliquefaciens strain FJ4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment