Detailed information NTG0411714

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: GRT08_RS16955
• Genome accession: NZ_CP047234
• Coordinates: 3438827..3439990 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus amyloliquefaciens strain FJ4
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3433827..3444990

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRT08_RS16925 (GRT08_16700)	-	3434092..3434511 (-)	420	WP_003151392.1	TIGR03826 family flagellar region protein	-
GRT08_RS16930 (GRT08_16705)	comFC	3434585..3435274 (-)	690	WP_198863951.1	phosphoribosyltransferase family protein	Machinery gene
GRT08_RS16935 (GRT08_16710)	-	3435280..3435564 (-)	285	WP_017418816.1	late competence development ComFB family protein	-
GRT08_RS16940 (GRT08_16715)	comFA	3435622..3437007 (-)	1386	WP_128574993.1	DEAD/DEAH box helicase	Machinery gene
GRT08_RS16945 (GRT08_16720)	-	3437115..3437963 (-)	849	WP_003151387.1	DegV family protein	-
GRT08_RS16950 (GRT08_16725)	degU	3438061..3438750 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
GRT08_RS16955 (GRT08_16730)	degS	3438827..3439990 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
GRT08_RS16960 (GRT08_16735)	-	3440213..3440860 (+)	648	WP_003151384.1	YigZ family protein	-
GRT08_RS16965 (GRT08_16740)	-	3440865..3442079 (+)	1215	WP_070082459.1	LCP family protein	-
GRT08_RS16970 (GRT08_16745)	-	3442169..3443245 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
GRT08_RS16975 (GRT08_16750)	-	3443378..3444574 (-)	1197	WP_128574994.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=411714 GRT08_RS16955 WP_007407484.1 3438827..3439990(-) (degS) [Bacillus amyloliquefaciens strain FJ4]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=411714 GRT08_RS16955 WP_007407484.1 3438827..3439990(-) (degS) [Bacillus amyloliquefaciens strain FJ4]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAGCAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCTTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951