Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GRT08_RS16940 Genome accession   NZ_CP047234
Coordinates   3435622..3437007 (-) Length   461 a.a.
NCBI ID   WP_128574993.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3430622..3442007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS16905 (GRT08_16680) flgL 3430797..3431714 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  GRT08_RS16910 (GRT08_16685) flgK 3431726..3433243 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  GRT08_RS16915 (GRT08_16690) - 3433259..3433741 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GRT08_RS16920 (GRT08_16695) flgM 3433756..3434022 (-) 267 WP_377802865.1 flagellar biosynthesis anti-sigma factor FlgM -
  GRT08_RS16925 (GRT08_16700) - 3434092..3434511 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  GRT08_RS16930 (GRT08_16705) comFC 3434585..3435274 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  GRT08_RS16935 (GRT08_16710) - 3435280..3435564 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  GRT08_RS16940 (GRT08_16715) comFA 3435622..3437007 (-) 1386 WP_128574993.1 DEAD/DEAH box helicase Machinery gene
  GRT08_RS16945 (GRT08_16720) - 3437115..3437963 (-) 849 WP_003151387.1 DegV family protein -
  GRT08_RS16950 (GRT08_16725) degU 3438061..3438750 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GRT08_RS16955 (GRT08_16730) degS 3438827..3439990 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GRT08_RS16960 (GRT08_16735) - 3440213..3440860 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52601.98 Da        Isoelectric Point: 10.0531

>NTDB_id=411712 GRT08_RS16940 WP_128574993.1 3435622..3437007(-) (comFA) [Bacillus amyloliquefaciens strain FJ4]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYFWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGSSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=411712 GRT08_RS16940 WP_128574993.1 3435622..3437007(-) (comFA) [Bacillus amyloliquefaciens strain FJ4]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTTTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCAGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAGGGCGTGCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.716

91.757

0.364

Multiple sequence alignment